2I54 | pdb_00002i54

Phosphomannomutase from Leishmania mexicana

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2i54a_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	Predicted hydrolases Cof	automated matches	(Leishmania mexicana ) [TaxId: 5665 ],	SCOPe (2.08)
B	d2i54b_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	Predicted hydrolases Cof	automated matches	(Leishmania mexicana ) [TaxId: 5665 ],	SCOPe (2.08)
C	d2i54c_	Alpha and beta proteins (a/b)	HAD-like	HAD-like	Predicted hydrolases Cof	automated matches	(Leishmania mexicana ) [TaxId: 5665 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Predicted hydrolases Cof	8062652	4002994	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HAD-like	8062653	3001890	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	HAD-like	8062653	3001890	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HAD-like	8062653	3001890	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	S6PP	e2i54A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: S6PP	ECOD (v294.1)
B	S6PP	e2i54B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: S6PP	ECOD (v294.1)
C	S6PP	e2i54C1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: S6PP	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
A	3.30.1240.20	Alpha Beta	2-Layer Sandwich	Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase	Chain: A	CATH (4.3.0)
B	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
B	3.30.1240.20	Alpha Beta	2-Layer Sandwich	Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase	Chain: A	CATH (4.3.0)
C	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
C	3.30.1240.20	Alpha Beta	2-Layer Sandwich	Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase	Chain: A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Phosphomannomutase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding protein homodimerization activity protein dimerization activity isomerase activity catalytic activity intramolecular phosphotransferase activity phosphomannomutase activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding protein homodimerization activity protein dimerization activity isomerase activity catalytic activity intramolecular phosphotransferase activity phosphomannomutase activity intramolecular transferase activity	nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process nucleotide-sugar metabolic process carbohydrate derivative metabolic process primary metabolic process GDP-D-mannose biosynthetic process from fructose-6-phosphate nucleobase-containing compound biosynthetic process nucleobase-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process GDP-mannose biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process nucleotide-sugar metabolic process carbohydrate derivative metabolic process primary metabolic process GDP-D-mannose biosynthetic process from fructose-6-phosphate nucleobase-containing compound biosynthetic process nucleobase-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process GDP-mannose biosynthetic process metabolic process cellular process small molecule metabolic process nucleotide-sugar biosynthetic process phosphorus metabolic process GDP-mannose metabolic process glycoprotein biosynthetic process glycoprotein metabolic process protein N-linked glycosylation macromolecule biosynthetic process protein metabolic process macromolecule metabolic process glycolipid metabolic process liposaccharide metabolic process lipid biosynthetic process glycolipid biosynthetic process lipid metabolic process monosaccharide metabolic process GDP-mannose biosynthetic process from mannose carbohydrate metabolic process mannose metabolic process hexose metabolic process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR023214	HAD superfamily	Homologous Superfamily
A, B, C	IPR005002	Phosphomannomutase	Family
A, B, C	IPR036412	HAD-like superfamily	Homologous Superfamily
A, B, C	IPR006379	HAD-superfamily hydrolase, subfamily IIB	Family
A, B, C	IPR043169	Phosphomannomutase, cap domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.