2I39 | pdb_00002i39

Crystal structure of Vaccinia virus N1L protein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8052543	3001974	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8052543	3001974	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8052543	3001974	SCOP2B (2022-06-29)
C	SCOP2 Family	VACV protein N1-like	8047916	4005875	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Bcl-2-like inhibitors of programmed cell death	8052543	3001974	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8052543	3001974	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8052543	3001974	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Poxvirus_1st	e2i39F1	A: alpha arrays	X: Toxins' membrane translocation domains	H: Bcl-2 inhibitors of programmed cell death (From Topology)	T: Bcl-2 inhibitors of programmed cell death	F: Poxvirus_1st	ECOD (1.6)
E	Poxvirus_1st	e2i39E1	A: alpha arrays	X: Toxins' membrane translocation domains	H: Bcl-2 inhibitors of programmed cell death (From Topology)	T: Bcl-2 inhibitors of programmed cell death	F: Poxvirus_1st	ECOD (1.6)
D	Poxvirus_1st	e2i39D1	A: alpha arrays	X: Toxins' membrane translocation domains	H: Bcl-2 inhibitors of programmed cell death (From Topology)	T: Bcl-2 inhibitors of programmed cell death	F: Poxvirus_1st	ECOD (1.6)
C	Poxvirus_1st	e2i39C1	A: alpha arrays	X: Toxins' membrane translocation domains	H: Bcl-2 inhibitors of programmed cell death (From Topology)	T: Bcl-2 inhibitors of programmed cell death	F: Poxvirus_1st	ECOD (1.6)
B	Poxvirus_1st	e2i39B1	A: alpha arrays	X: Toxins' membrane translocation domains	H: Bcl-2 inhibitors of programmed cell death (From Topology)	T: Bcl-2 inhibitors of programmed cell death	F: Poxvirus_1st	ECOD (1.6)
A	Poxvirus_1st	e2i39A1	A: alpha arrays	X: Toxins' membrane translocation domains	H: Bcl-2 inhibitors of programmed cell death (From Topology)	T: Bcl-2 inhibitors of programmed cell death	F: Poxvirus_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.10.437.20	Mainly Alpha	Orthogonal Bundle	Apoptosis Regulator Bcl-x	dsDNA poxvirus	CATH (4.3.0)
E	1.10.437.20	Mainly Alpha	Orthogonal Bundle	Apoptosis Regulator Bcl-x	dsDNA poxvirus	CATH (4.3.0)
D	1.10.437.20	Mainly Alpha	Orthogonal Bundle	Apoptosis Regulator Bcl-x	dsDNA poxvirus	CATH (4.3.0)
C	1.10.437.20	Mainly Alpha	Orthogonal Bundle	Apoptosis Regulator Bcl-x	dsDNA poxvirus	CATH (4.3.0)
B	1.10.437.20	Mainly Alpha	Orthogonal Bundle	Apoptosis Regulator Bcl-x	dsDNA poxvirus	CATH (4.3.0)
A	1.10.437.20	Mainly Alpha	Orthogonal Bundle	Apoptosis Regulator Bcl-x	dsDNA poxvirus	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF06227	Poxvirus Bcl-2-like proteins (Poxv_Bcl-2-like)	Poxvirus Bcl-2-like proteins	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Protein N1	-	symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction regulation of biological process symbiont-mediated perturbation of host cellular process regulation of cellular process symbiont-mediated perturbation of host programmed cell death biological regulation regulation of killing of cells of another organism disruption of cell in another organism cellular process symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction regulation of biological process symbiont-mediated perturbation of host cellular process regulation of cellular process symbiont-mediated perturbation of host programmed cell death biological regulation regulation of killing of cells of another organism disruption of cell in another organism cellular process regulation of cell killing symbiont-mediated perturbation of host apoptosis disruption of anatomical structure in another organism killing of cells of another organism cell killing symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host NF-kappaB cascade symbiont-mediated perturbation of host signal transduction pathway symbiont-mediated suppression of host NF-kappaB cascade	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR022819	Poxvirus Bcl-2-like	Family
A, B, C, D, E A, B, C, D, E, F	IPR043018	Poxvirus domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR009353	Orthopoxvirus, Protein N1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.