X-ray Crystal Structure of Protein yopX from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR411.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d2i2lc_ | All beta proteins | YopX-like | YopX-like | YopX-like | Hypothetical protein YopX | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
| B | d2i2lb2 | All beta proteins | YopX-like | YopX-like | YopX-like | Hypothetical protein YopX | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
| B | d2i2lb3 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
| A | d2i2la1 | All beta proteins | YopX-like | YopX-like | YopX-like | Hypothetical protein YopX | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | YopX-like | 8034363 | 3000201 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | YopX-like | 8034363 | 3000201 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | YopX-like | 8021983 | 4001651 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | YopX-like | 8034363 | 3000201 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | PDZ_2 | e2i2lC1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: PDZ_2 | ECOD (v294.1) |
| C | Cloacin | e2i2lC2 | A: a/b three-layered sandwiches | X: Cloacin translocation domain | H: Cloacin translocation domain | T: Cloacin translocation domain | F: Cloacin | ECOD (v294.1) |
| B | PDZ_2 | e2i2lB1 | A: a/b three-layered sandwiches | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: PDZ_2 | ECOD (v294.1) |
| B | Cloacin | e2i2lB2 | A: a/b three-layered sandwiches | X: Cloacin translocation domain | H: Cloacin translocation domain | T: Cloacin translocation domain | F: Cloacin | ECOD (v294.1) |
| A | YopX | e2i2lA1 | A: beta barrels | X: YopX, C-terminal domain-like | H: YopX, C-terminal domain-like | T: YopX, C-terminal domain-like | F: YopX | ECOD (v294.1) |
| A | YopX | e2i2lA2 | A: beta duplicates or obligate multimers | X: YopX, N-terminal domain-like | H: YopX, N-terminal domain-like | T: YopX, N-terminal domain-like | F: YopX | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 2.10.70.50 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
| C | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| B | 2.10.70.50 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
| B | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| A | 2.10.70.50 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
| A | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF09643 | YopX protein (YopX) | YopX protein | YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR019096 | YopX protein | Domain |
