2HYI

Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth A]	d2hyia_	Alpha and beta proteins (a+b)	Mago nashi protein	Mago nashi protein	Mago nashi protein	Mago nashi protein	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d2hyig_	Alpha and beta proteins (a+b)	Mago nashi protein	Mago nashi protein	Mago nashi protein	Mago nashi protein	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth B]	d2hyib_	Alpha and beta proteins (a+b)	Ferredoxin-like	RNA-binding domain, RBD, aka RNA recognition motif (RRM)	Canonical RBD	RNA-binding protein 8	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d2hyih_	Alpha and beta proteins (a+b)	Ferredoxin-like	RNA-binding domain, RBD, aka RNA recognition motif (RRM)	Canonical RBD	RNA-binding protein 8	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth C]	d2hyic1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Tandem AAA-ATPase domain	Probable ATP-dependent RNA helicase DDX48	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E [auth C]	d2hyic3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I	d2hyii1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Tandem AAA-ATPase domain	Probable ATP-dependent RNA helicase DDX48	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I	d2hyii3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	Mago nashi protein	8042952	3000634	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Mago nashi protein	8042952	3000634	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	RNA-binding domain RBD	8042953	3000110	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RNA-binding domain RBD	8042953	3000110	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	RecA-like P-loop NTPases	8042950	3002019	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	RecA-like P-loop NTPases	8042951	3002019	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RecA-like P-loop NTPases	8042951	3002019	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RecA-like P-loop NTPases	8042950	3002019	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth A]	PF02792	e2hyiA1	A: a+b two layers	X: Mago nashi protein (From Topology)	H: Mago nashi protein (From Topology)	T: Mago nashi protein	F: PF02792	ECOD (1.6)
G	PF02792	e2hyiG1	A: a+b two layers	X: Mago nashi protein (From Topology)	H: Mago nashi protein (From Topology)	T: Mago nashi protein	F: PF02792	ECOD (1.6)
D [auth B]	PF00076	e2hyiB1	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF00076	ECOD (1.6)
H	PF00076	e2hyiH1	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: PF00076	ECOD (1.6)
E [auth C]	PF00270	e2hyiC2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00270	ECOD (1.6)
E [auth C]	PF00271	e2hyiC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00271	ECOD (1.6)
I	PF00270	e2hyiI2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00270	ECOD (1.6)
I	PF00271	e2hyiI1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00271	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth A]	3.30.1560.10	Alpha Beta	2-Layer Sandwich	Mago nashi protein	Mago nashi	CATH (4.3.0)
G	3.30.1560.10	Alpha Beta	2-Layer Sandwich	Mago nashi protein	Mago nashi	CATH (4.3.0)
D [auth B]	3.30.70.330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RRM (RNA recognition motif) domain	CATH (4.3.0)
H	3.30.70.330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RRM (RNA recognition motif) domain	CATH (4.3.0)
E [auth C]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
I	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], G	PF02792	Mago nashi protein (Mago_nashi)	Mago nashi protein	-	Family
D [auth B], H	PF00076	RNA recognition motif (RRM_1)	RNA recognition motif	The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...	The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.	Domain
E [auth C], I	PF00270	DEAD/DEAH box helicase (DEAD)	DEAD/DEAH box helicase	Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...	Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.	Domain
E [auth C], I	PF00271	Helicase conserved C-terminal domain (Helicase_C)	Helicase conserved C-terminal domain	The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.	Domain
F [auth D], J	PF09405	CASC3/Barentsz eIF4AIII binding (Btz)	CASC3/Barentsz eIF4AIII binding	This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of m ...	This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of mRNA in metazoa. The complex is formed by the association of four proteins (eIF4AIII, Barentsz, Mago, and Y14), mRNA, and ATP. This domain wraps around eIF4AIII and stacks against the 5' nucleotide [1][2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth F], B [auth L]	5'-R(UPUPUPUPUPU)-3'	-	-	-
C [auth A], G	Protein mago nashi homolog	RNA binding binding organic cyclic compound binding nucleic acid binding	RNA splicing cellular biosynthetic process cellular metabolic process RNA metabolic process cellular nitrogen compound metabolic process primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process heterocycle metabolic process biosynthetic process organic substance biosynthetic process RNA splicing cellular biosynthetic process cellular metabolic process RNA metabolic process cellular nitrogen compound metabolic process primary metabolic process gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process heterocycle metabolic process biosynthetic process organic substance biosynthetic process nitrogen compound metabolic process metabolic process cellular process RNA processing macromolecule metabolic process cellular aromatic compound metabolic process mRNA processing mRNA metabolic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome RNA splicing, via transesterification reactions with bulged adenosine as nucleophile cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport organic substance transport nucleic acid transport intracellular transport establishment of localization RNA export from nucleus establishment of RNA localization macromolecule localization regulation of cellular process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process cellular catabolic process regulation of nitrogen compound metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process RNA catabolic process mRNA catabolic process regulation of biological process negative regulation of metabolic process regulation of cellular metabolic process aromatic compound catabolic process negative regulation of cellular biosynthetic process cellular nitrogen compound catabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression negative regulation of macromolecule biosynthetic process heterocycle catabolic process regulation of macromolecule biosynthetic process regulation of metabolic process catabolic process macromolecule catabolic process regulation of mRNA catabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process nuclear-transcribed mRNA catabolic process biological regulation regulation of catabolic process regulation of macromolecule metabolic process organic cyclic compound catabolic process regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of cellular biosynthetic process negative regulation of biosynthetic process regulation of cellular catabolic process regulation of mRNA metabolic process organic substance catabolic process alternative mRNA splicing, via spliceosome regulation of mRNA splicing, via spliceosome regulation of mRNA processing regulation of RNA splicing regulation of alternative mRNA splicing, via spliceosome regulation of amide metabolic process organonitrogen compound biosynthetic process cellular nitrogen compound biosynthetic process post-transcriptional regulation of gene expression protein metabolic process amide metabolic process organonitrogen compound metabolic process regulation of protein metabolic process amide biosynthetic process translation peptide biosynthetic process regulation of translation peptide metabolic process	membrane-bounded organelle exon-exon junction subcomplex mago-y14 protein-containing complex intracellular anatomical structure nucleus exon-exon junction complex nuclear protein-containing complex ATPase inhibitor complex intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle organelle membrane-enclosed lumen intracellular organelle lumen membrane-bounded organelle exon-exon junction subcomplex mago-y14 protein-containing complex intracellular anatomical structure nucleus exon-exon junction complex nuclear protein-containing complex ATPase inhibitor complex intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle organelle membrane-enclosed lumen intracellular organelle lumen nuclear speck nuclear body nucleoplasm organelle lumen nuclear lumen catalytic step 2 spliceosome catalytic complex spliceosomal complex ribonucleoprotein complex cytoplasm cytosol
D [auth B], H	RNA-binding protein 8A	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding	cellular localization nitrogen compound transport nucleocytoplasmic transport transport cellular biosynthetic process nuclear transport mRNA transport localization organic substance metabolic process mRNA export from nucleus establishment of localization in cell organic substance biosynthetic process RNA localization nuclear export cellular localization nitrogen compound transport nucleocytoplasmic transport transport cellular biosynthetic process nuclear transport mRNA transport localization organic substance metabolic process mRNA export from nucleus establishment of localization in cell organic substance biosynthetic process RNA localization nuclear export nucleobase-containing compound transport RNA transport organic substance transport cellular metabolic process nucleic acid transport intracellular transport gene expression establishment of localization macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization cellular process metabolic process macromolecule metabolic process regulation of cellular process alternative mRNA splicing, via spliceosome RNA metabolic process regulation of mRNA splicing, via spliceosome mRNA processing regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of nitrogen compound metabolic process regulation of RNA metabolic process heterocycle metabolic process nitrogen compound metabolic process RNA processing regulation of nucleobase-containing compound metabolic process regulation of biosynthetic process regulation of mRNA processing RNA splicing regulation of biological process biological regulation cellular nitrogen compound metabolic process primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process regulation of RNA splicing mRNA metabolic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression RNA splicing, via transesterification reactions regulation of alternative mRNA splicing, via spliceosome mRNA splicing, via spliceosome RNA splicing, via transesterification reactions with bulged adenosine as nucleophile regulation of macromolecule biosynthetic process regulation of mRNA metabolic process regulation of metabolic process cellular aromatic compound metabolic process regulation of amide metabolic process organonitrogen compound biosynthetic process cellular nitrogen compound biosynthetic process post-transcriptional regulation of gene expression protein metabolic process amide metabolic process organonitrogen compound metabolic process regulation of protein metabolic process amide biosynthetic process translation peptide biosynthetic process regulation of translation peptide metabolic process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay negative regulation of biological process negative regulation of cellular metabolic process cellular catabolic process RNA catabolic process mRNA catabolic process negative regulation of metabolic process aromatic compound catabolic process negative regulation of cellular biosynthetic process cellular nitrogen compound catabolic process nucleobase-containing compound catabolic process negative regulation of gene expression negative regulation of macromolecule biosynthetic process heterocycle catabolic process catabolic process macromolecule catabolic process regulation of mRNA catabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process nuclear-transcribed mRNA catabolic process regulation of catabolic process organic cyclic compound catabolic process regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay negative regulation of biosynthetic process regulation of cellular catabolic process organic substance catabolic process	membrane-bounded organelle exon-exon junction subcomplex mago-y14 protein-containing complex intracellular anatomical structure nucleus exon-exon junction complex nuclear protein-containing complex ATPase inhibitor complex intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle organelle membrane-enclosed lumen intracellular organelle lumen membrane-bounded organelle exon-exon junction subcomplex mago-y14 protein-containing complex intracellular anatomical structure nucleus exon-exon junction complex nuclear protein-containing complex ATPase inhibitor complex intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle organelle membrane-enclosed lumen intracellular organelle lumen nuclear speck nuclear body nucleoplasm organelle lumen nuclear lumen U2-type spliceosomal complex catalytic complex U2-type catalytic step 1 spliceosome spliceosomal complex ribonucleoprotein complex catalytic step 1 spliceosome catalytic step 2 spliceosome cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection cell body neuronal cell body
E [auth C], I	Probable ATP-dependent RNA helicase DDX48	selenocysteine insertion sequence binding RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding ribonucleoprotein complex binding protein-containing complex binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding selenocysteine insertion sequence binding RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding ribonucleoprotein complex binding protein-containing complex binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding poly(A) binding poly-purine tract binding single-stranded RNA binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA RNA stem-loop binding	regulation of amide metabolic process regulation of cellular process organonitrogen compound biosynthetic process negative regulation of biological process negative regulation of nitrogen compound metabolic process cellular nitrogen compound biosynthetic process negative regulation of cellular metabolic process regulation of primary metabolic process regulation of nitrogen compound metabolic process post-transcriptional regulation of gene expression organic substance biosynthetic process negative regulation of protein metabolic process regulation of biological process negative regulation of amide metabolic process regulation of amide metabolic process regulation of cellular process organonitrogen compound biosynthetic process negative regulation of biological process negative regulation of nitrogen compound metabolic process cellular nitrogen compound biosynthetic process negative regulation of cellular metabolic process regulation of primary metabolic process regulation of nitrogen compound metabolic process post-transcriptional regulation of gene expression organic substance biosynthetic process negative regulation of protein metabolic process regulation of biological process negative regulation of amide metabolic process cellular metabolic process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular metabolic process primary metabolic process amide biosynthetic process cellular nitrogen compound metabolic process negative regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process peptide biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process peptide metabolic process cellular biosynthetic process negative regulation of translation organic substance metabolic process negative regulation of cellular process nitrogen compound metabolic process protein metabolic process amide metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process organonitrogen compound metabolic process biological regulation regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of cellular biosynthetic process negative regulation of biosynthetic process regulation of translation cellular process behavior multicellular organismal process exploration behavior cell communication trans-synaptic signaling regulation of translation at synapse regulation of trans-synaptic signaling modulation of chemical synaptic transmission signaling regulation of translation at synapse, modulating synaptic transmission synaptic signaling postsynaptic modulation of chemical synaptic transmission regulation of signaling cell-cell signaling regulation of translation at postsynapse chemical synaptic transmission regulation of translation at postsynapse, modulating synaptic transmission anterograde trans-synaptic signaling regulation of cell communication cellular response to endogenous stimulus cellular response to growth factor stimulus response to stimulus response to endogenous stimulus cellular response to nerve growth factor stimulus cellular response to brain-derived neurotrophic factor stimulus response to nerve growth factor response to growth factor cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport organic substance transport nucleic acid transport intracellular transport establishment of localization RNA export from nucleus establishment of RNA localization macromolecule localization developmental process embryonic organ morphogenesis embryonic cranial skeleton morphogenesis chordate embryonic development embryonic morphogenesis animal organ development embryo development multicellular organism development anatomical structure morphogenesis embryo development ending in birth or egg hatching skeletal system development anatomical structure development cranial skeletal system development animal organ morphogenesis embryonic skeletal system development skeletal system morphogenesis embryonic organ development embryonic skeletal system morphogenesis system development ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing ncRNA processing nucleobase-containing compound metabolic process cellular component biogenesis ribosome biogenesis heterocycle metabolic process RNA processing cellular component organization or biogenesis rRNA metabolic process nucleic acid metabolic process organic cyclic compound metabolic process ncRNA metabolic process cellular aromatic compound metabolic process regulation of translational elongation translational readthrough negative regulation of translational elongation selenocysteine incorporation regulation of selenocysteine incorporation negative regulation of selenocysteine incorporation translational elongation positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of protein metabolic process positive regulation of biological process positive regulation of translation positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of cellular process positive regulation of nitrogen compound metabolic process positive regulation of gene expression positive regulation of amide metabolic process positive regulation of cellular biosynthetic process mRNA processing RNA splicing mRNA metabolic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome RNA splicing, via transesterification reactions with bulged adenosine as nucleophile nuclear-transcribed mRNA catabolic process, nonsense-mediated decay cellular catabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process RNA catabolic process mRNA catabolic process aromatic compound catabolic process cellular nitrogen compound catabolic process nucleobase-containing compound catabolic process heterocycle catabolic process catabolic process macromolecule catabolic process regulation of mRNA catabolic process nuclear-transcribed mRNA catabolic process regulation of catabolic process organic cyclic compound catabolic process regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of cellular catabolic process regulation of mRNA metabolic process organic substance catabolic process system process learning learning or memory nervous system process cognition associative learning cellular response to stimulus regulation of postsynaptic membrane potential regulation of system process regulation of signal transduction chemical synaptic transmission, postsynaptic modulation of excitatory postsynaptic potential regulation of multicellular organismal process signal transduction regulation of biological quality cell surface receptor signaling pathway regulation of nervous system process regulation of response to stimulus negative regulation of excitatory postsynaptic potential excitatory postsynaptic potential regulation of membrane potential response to organic substance response to chemical response to organic cyclic compound cellular response to inorganic substance cellular response to chemical stimulus response to selenite ion cellular response to selenite ion response to inorganic substance	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane nuclear speck nuclear body nucleoplasm U2-type spliceosomal complex protein-containing complex catalytic complex nuclear protein-containing complex U2-type catalytic step 1 spliceosome spliceosomal complex ribonucleoprotein complex catalytic step 1 spliceosome catalytic step 2 spliceosome cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection synapse cell junction glutamatergic synapse exon-exon junction complex cell body neuronal cell body postsynapse
F [auth D], J	Protein CASC3	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding identical protein binding	localization cellular localization cellular macromolecule localization macromolecule localization intracellular mRNA localization cellular process RNA localization cellular biosynthetic process RNA metabolic process mRNA processing nucleobase-containing compound metabolic process organic substance metabolic process heterocycle metabolic process organic substance biosynthetic process localization cellular localization cellular macromolecule localization macromolecule localization intracellular mRNA localization cellular process RNA localization cellular biosynthetic process RNA metabolic process mRNA processing nucleobase-containing compound metabolic process organic substance metabolic process heterocycle metabolic process organic substance biosynthetic process nitrogen compound metabolic process RNA processing RNA splicing cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome metabolic process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process cellular aromatic compound metabolic process nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport mRNA export from nucleus establishment of localization in cell nuclear export nucleobase-containing compound transport RNA transport organic substance transport nucleic acid transport intracellular transport establishment of localization RNA export from nucleus establishment of RNA localization regulation of cellular process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process cellular catabolic process regulation of nitrogen compound metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process RNA catabolic process mRNA catabolic process regulation of biological process negative regulation of metabolic process regulation of cellular metabolic process aromatic compound catabolic process negative regulation of cellular biosynthetic process cellular nitrogen compound catabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression negative regulation of macromolecule biosynthetic process heterocycle catabolic process regulation of macromolecule biosynthetic process regulation of metabolic process catabolic process macromolecule catabolic process regulation of mRNA catabolic process negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process nuclear-transcribed mRNA catabolic process biological regulation regulation of catabolic process regulation of macromolecule metabolic process organic cyclic compound catabolic process regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of cellular biosynthetic process negative regulation of biosynthetic process regulation of cellular catabolic process regulation of mRNA metabolic process organic substance catabolic process regulation of amide metabolic process organonitrogen compound biosynthetic process cellular nitrogen compound biosynthetic process post-transcriptional regulation of gene expression protein metabolic process amide metabolic process organonitrogen compound metabolic process regulation of protein metabolic process amide biosynthetic process translation peptide biosynthetic process regulation of translation peptide metabolic process	intracellular anatomical structure cytoplasmic ribonucleoprotein granule cellular anatomical entity ribonucleoprotein granule intracellular organelle organelle intracellular non-membrane-bounded organelle cytoplasm supramolecular complex non-membrane-bounded organelle cytoplasmic stress granule membrane-bounded organelle nucleus membrane-enclosed lumen intracellular anatomical structure cytoplasmic ribonucleoprotein granule cellular anatomical entity ribonucleoprotein granule intracellular organelle organelle intracellular non-membrane-bounded organelle cytoplasm supramolecular complex non-membrane-bounded organelle cytoplasmic stress granule membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body nucleoplasm organelle lumen nuclear lumen U2-type spliceosomal complex protein-containing complex catalytic complex nuclear protein-containing complex U2-type catalytic step 1 spliceosome spliceosomal complex ribonucleoprotein complex catalytic step 1 spliceosome nuclear membrane membrane endomembrane system organelle envelope nuclear envelope envelope organelle membrane cytosol perinuclear region of cytoplasm exon-exon junction complex somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], G	IPR004023	Mago nashi protein	Family
C [auth A], G	IPR036605	Mago nashi superfamily	Homologous Superfamily
D [auth B], H	IPR033744	RBM8, RNA recognition motif	Domain
D [auth B], H	IPR000504	RNA recognition motif domain	Domain
D [auth B], H	IPR008111	RNA-binding motif protein 8	Family
D [auth B], H	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
D [auth B], H	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
E [auth C], I	IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site	Conserved Site
E [auth C], I	IPR014014	RNA helicase, DEAD-box type, Q motif	Domain
E [auth C], I	IPR011545	DEAD/DEAH box helicase domain	Domain
E [auth C], I	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E [auth C], I	IPR001650	Helicase, C-terminal domain-like	Domain
E [auth C], I	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
F [auth D], J	IPR018545	Btz domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth A], G	Pharos: P61326	lymphoplasmacytic lymphoma plasma cell myeloma medulloblastoma ovarian cancer
D [auth B], H	Pharos: Q9Y5S9	thrombocytopenia-absent radius syndrome astrocytic tumor Cytopenia interstitial cystitis malignant mesothelioma ovarian cancer psoriasis tuberculosis breast cancer glioblastoma large cell medulloblastoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia congenital anemia intellectual disability thrombocytopenia-absent radius syndrome astrocytic tumor Cytopenia interstitial cystitis malignant mesothelioma ovarian cancer psoriasis tuberculosis breast cancer glioblastoma large cell medulloblastoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia congenital anemia intellectual disability lung cancer myopathy primitive neuroectodermal tumor
E [auth C], I	Pharos: P38919	Richieri Costa-Pereira syndrome psoriasis adrenal cortex carcinoma glioblastoma large cell medulloblastoma ovarian cancer astrocytic tumor intellectual disability lung cancer diabetes mellitus invasive ductal breast carcinoma medulloblastoma
F [auth D], J	Pharos: O15234	chronic obstructive pulmonary disease oligodendroglioma large cell medulloblastoma osteosarcoma medulloblastoma psoriasis

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.