2HWJ | pdb_00002hwj

Crystal structure of protein Atu1540 from Agrobacterium tumefaciens

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2hwjf_	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	Atu1540-like	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
E	d2hwje_	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	Atu1540-like	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
D	d2hwjd_	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	Atu1540-like	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
C	d2hwjc_	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	Atu1540-like	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
B	d2hwjb_	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	Atu1540-like	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
A	d2hwja1	Alpha and beta proteins (a+b)	ParB/Sulfiredoxin	ParB/Sulfiredoxin	Atu1540-like	Hypothetical protein Atu1540	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	ParB/Sulfiredoxin	8034299	3001301	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ParB/Sulfiredoxin	8034299	3001301	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ParB/Sulfiredoxin	8034299	3001301	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ParB/Sulfiredoxin	8034299	3001301	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ParB/Sulfiredoxin	8034299	3001301	SCOP2B (2022-06-29)
A	SCOP2 Family	Atu1540-like	8021919	4001736	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ParB/Sulfiredoxin	8034299	3001301	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	HHH_5	e2hwjF1	A: alpha bundles	X: EGF-like	H: YozE-like	T: YozE-like	F: HHH_5	ECOD (develop294)
F	RNA_pol_Rpb2_2	e2hwjF2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: RNA_pol_Rpb2_2	ECOD (develop294)
E	HHH_5	e2hwjE1	A: alpha bundles	X: EGF-like	H: YozE-like	T: YozE-like	F: HHH_5	ECOD (develop294)
E	RNA_pol_Rpb2_2	e2hwjE2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: RNA_pol_Rpb2_2	ECOD (develop294)
D	HHH_5	e2hwjD1	A: alpha bundles	X: EGF-like	H: YozE-like	T: YozE-like	F: HHH_5	ECOD (develop294)
D	RNA_pol_Rpb2_2	e2hwjD2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: RNA_pol_Rpb2_2	ECOD (develop294)
C	HHH_5	e2hwjC1	A: alpha bundles	X: EGF-like	H: YozE-like	T: YozE-like	F: HHH_5	ECOD (develop294)
C	RNA_pol_Rpb2_2	e2hwjC2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: RNA_pol_Rpb2_2	ECOD (develop294)
B	HHH_5	e2hwjB1	A: alpha bundles	X: EGF-like	H: YozE-like	T: YozE-like	F: HHH_5	ECOD (develop294)
B	RNA_pol_Rpb2_2	e2hwjB2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: RNA_pol_Rpb2_2	ECOD (develop294)
A	ParBc_2	e2hwjA1	A: alpha arrays	X: C-terminal helical domain in Atu1540-like proteins	H: C-terminal helical domain in Atu1540-like proteins	T: C-terminal helical domain in Atu1540-like proteins	F: ParBc_2	ECOD (develop294)
A	ParBc	e2hwjA2	A: few secondary structure elements	X: ParB/Sulfiredoxin	H: ParB/Sulfiredoxin	T: ParB/Sulfiredoxin	F: ParBc	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.90.1530.10	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	CATH (4.3.0)
F	1.10.8.10	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
E	3.90.1530.10	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	CATH (4.3.0)
E	1.10.8.10	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
D	3.90.1530.10	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	CATH (4.3.0)
D	1.10.8.10	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
C	3.90.1530.10	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	CATH (4.3.0)
C	1.10.8.10	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
B	3.90.1530.10	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	CATH (4.3.0)
B	1.10.8.10	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A	3.90.1530.10	Alpha Beta	Alpha-Beta Complex	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain	CATH (4.3.0)
A	1.10.8.10	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF08857	Putative ParB-like nuclease (ParBc_2)	Putative ParB-like nuclease	This domain is probably distantly related to Pfam:PF02195. Suggesting these uncharacterised proteins have a nuclease function.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR014956	Putative ParB-like nuclease	Family
A, B, C, D, E A, B, C, D, E, F	IPR036086	ParB/Sulfiredoxin superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016932	Uncharacterised conserved protein UCP029669	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.