Crystal structure of yeast mitochondrial F1-ATPase
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| E | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| D | SCOP2 Family | ATP synthase alpha/beta N-terminal domain-like | 8056925 | 4002275 | SCOP2 (2022-06-29) |
| D | SCOP2 Family | ATP synthase nucleotide-binding domain-like | 8056927 | 4004011 | SCOP2 (2022-06-29) |
| D | SCOP2 Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2 (2022-06-29) |
| D | SCOP2 Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2 (2022-06-29) |
| D | SCOP2 Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2 (2022-06-29) |
| G | SCOP2B Superfamily | ATP synthase gamma subunit-like | 8072555 | 3000451 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | ATP synthase gamma subunit-like | 8072555 | 3000451 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| K | SCOP2 Family | ATP synthase alpha/beta N-terminal domain-like | 8056889 | 4002275 | SCOP2 (2022-06-29) |
| K | SCOP2 Family | ATP synthase nucleotide-binding domain-like | 8056891 | 4004011 | SCOP2 (2022-06-29) |
| K | SCOP2 Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2 (2022-06-29) |
| K | SCOP2 Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2 (2022-06-29) |
| K | SCOP2 Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2 (2022-06-29) |
| L | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E | MarR | e2hldE1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| E | V-set | e2hldE4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| F | MarR | e2hldF1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| F | V-set | e2hldF4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| M | MarR | e2hldM1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| M | V-set | e2hldM4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| N | MarR | e2hldN1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| N | V-set | e2hldN4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| O | MarR | e2hldO1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| O | V-set | e2hldO4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| V | MarR | e2hldV1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| V | V-set | e2hldV4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| W | MarR | e2hldW1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| W | V-set | e2hldW4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| X | MarR | e2hldX1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| X | V-set | e2hldX4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| D | ATP-synt_ab_N | e2hldD1 | A: alpha bundles | X: Globin-like | H: Globin-like | T: Globin-like | F: ATP-synt_ab_N | ECOD (develop294) |
| D | V-set | e2hldD4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| I | Homeodomain | e2hldI1 | A: alpha bundles | X: Globin-like | H: Globin-like | T: Globin-like | F: Homeodomain | ECOD (develop294) |
| Q | e2hldQ1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Fibronectin type I module-like | T: Fibronectin type I module | F: | ECOD (develop294) | |
| Q | e2hldQ2 | A: alpha bundles | X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | F: | ECOD (develop294) | |
| H | e2hldH1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: RIFT-related | T: acid protease | F: | ECOD (develop294) | |
| G | PHP | e2hldG2 | A: alpha bundles | X: Fusion glycoprotein F2 | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: PHP | ECOD (develop294) |
| P | MarR | e2hldP1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| Y | MarR | e2hldY1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| B | MarR | e2hldB1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| C | MarR | e2hldC1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| J | MarR | e2hldJ1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| K | MarR | e2hldK1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| L | MarR | e2hldL1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| S | MarR | e2hldS1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| T | MarR | e2hldT1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| U | MarR | e2hldU1 | A: alpha bundles | X: HTH | H: Nudix | T: winged helix domain | F: MarR | ECOD (develop294) |
| A | ATP-synt_ab_N | e2hldA1 | A: alpha bundles | X: Globin-like | H: Globin-like | T: Globin-like | F: ATP-synt_ab_N | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF21334 | Fungal epsilon subunit of F1F0-ATP synthase C-terminal domain (ATPD_C_fung) | Fungal epsilon subunit of F1F0-ATP synthase C-terminal domain | F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core, and F0 which contains the membrane proton channel. This entry includes ATP synthase subunit delta from fungi (called epsilon in bacteria or chloropla ... | Domain | |
| PF00231 | ATP synthase (ATP-synt) | ATP synthase | Domain | ||
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF00306 | ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C) | ATP synthase alpha/beta chain, C terminal domain | Domain | ||
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | F-type ATPase | F1-ATPase |














