Crystal structure of JW1657 from Escherichia coli
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d2hiqa_ | Alpha and beta proteins (a+b) | Ferredoxin-like | Dimeric alpha+beta barrel | Hypothetical protein YdhR | Hypothetical protein YdhR | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
| B | d2hiqb_ | Alpha and beta proteins (a+b) | Ferredoxin-like | Dimeric alpha+beta barrel | Hypothetical protein YdhR | Hypothetical protein YdhR | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | Hypothetical protein YdhR | 8029969 | 4003756 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Dimeric alpha+beta barrel | 8042348 | 3000089 | SCOP2 (2022-06-29) |
| B | SCOP2B Superfamily | Dimeric alpha+beta barrel | 8042348 | 3000089 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | ydhR | e2hiqA1 | A: a+b two layers | X: Alpha-beta plaits | H: Dimeric alpha+beta barrel | T: Dimeric alpha+beta barrel | F: ydhR | ECOD (v294.1) |
| B | Propep_M14 | e2hiqB1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: Rpp14/Pop5-like | T: Rpp14/Pop5-like | F: Propep_M14 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.30.70.100 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
| B | 3.30.70.100 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF08803 | Putative mono-oxygenase ydhR (ydhR) | Putative mono-oxygenase ydhR | ydhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices [1]. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Hypothetical protein ydhR | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR014910 | Putative monooxygenase YdhR | Family | |
| IPR011008 | Dimeric alpha-beta barrel | Homologous Superfamily |














