2HGK | pdb_00002hgk

Solution NMR Structure of protein YqcC from E. coli: Northeast Structural Genomics Consortium target ER225

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2hgka1 All alpha proteins Bromodomain-like YqcC-like YqcC-like Hypothetical protein YqcC (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad2hgka2 Artifacts Tags Tags Tags C-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyYqcC-like 8021830 4001339 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYqcC-like 8034210 3001327 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADUF446e2hgkA1 A: alpha bundlesX: Bromodomain-likeH: YqcC-like (From Topology)T: YqcC-likeF: DUF446ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.1440.40 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) YqcC-likeCATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04287tRNA pseudouridine synthase C (DUF446)tRNA pseudouridine synthase C- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Hypothetical protein yqcC- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR023376YqcC-like domainDomain
IPR007384Protein of unknown function UCP006257Family
IPR036814YqcC-like superfamilyHomologous Superfamily