2H57 | pdb_00002h57

Crystal structure of human ADP-ribosylation factor-like 6

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2h57b_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2h57c_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2h57a_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Ras-like P-loop GTPases	8057438	3002022	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ras-like P-loop GTPases	8057438	3002022	SCOP2B (2022-06-29)
A	SCOP2 Family	Ras-like monodomain GTPases	8057437	4004043	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ras-like P-loop GTPases	8057438	3002022	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PCNA_N	e2h57B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.1)
C	PCNA_N	e2h57C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: PCNA_N	ECOD (v294.1)
A	Ldh_1_N	e2h57A1	A: a/b three-layered sandwiches	X: Globin-like	H: Globin-like	T: Globin-like	F: Ldh_1_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00025	ADP-ribosylation factor family (Arf)	ADP-ribosylation factor family	Pfam combines a number of different Prosite families together	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	ADP-ribosylation factor-like protein 6	binding phospholipid binding lipid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding binding phospholipid binding lipid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development localization protein localization to cilium protein localization to organelle macromolecule localization developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development localization protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction smoothened signaling pathway cell communication regulation of response to stimulus regulation of cell communication signal transduction regulation of smoothened signaling pathway protein localization to non-motile cilium establishment of protein localization cellular localization establishment of protein localization to membrane protein targeting localization within membrane establishment of localization protein targeting to membrane organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly organelle organization cilium assembly cilium organization cell projection assembly determination of bilateral symmetry pattern specification process determination of left/right symmetry left/right pattern formation regionalization specification of symmetry transport intracellular transport protein transport establishment of localization in cell intracellular protein transport establishment of protein localization to plasma membrane protein transport within lipid bilayer membrane organization protein localization to cell periphery protein localization to plasma membrane protein localization to membrane protein transport from ciliary membrane to plasma membrane fat cell differentiation cellular developmental process cell differentiation vesicle localization establishment of organelle localization establishment of melanosome localization establishment of vesicle localization cellular pigmentation pigment granule transport establishment of pigment granule localization pigmentation pigment granule localization organelle localization melanosome transport melanosome localization sensory perception of light stimulus system process sensory perception nervous system process visual perception vesicle-mediated transport Wnt signaling pathway retina layer formation camera-type eye morphogenesis sensory organ development eye development retina development in camera-type eye visual system development neural retina development retina morphogenesis in camera-type eye eye morphogenesis anatomical structure morphogenesis sensory organ morphogenesis camera-type eye development anatomical structure formation involved in morphogenesis animal organ morphogenesis sensory system development	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection membrane intracellular anatomical structure axoneme ciliary plasm intracellular membraneless organelle intracellular organelle cytoskeleton membraneless organelle membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection membrane intracellular anatomical structure axoneme ciliary plasm intracellular membraneless organelle intracellular organelle cytoskeleton membraneless organelle cytoplasm polymeric cytoskeletal fiber axonemal microtubule cytoplasmic microtubule supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytosol cell periphery plasma membrane nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen membrane coat protein-containing complex membrane protein complex coated membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C	IPR041839	ADP-ribosylation factor-like protein 6	Family
A, B, C	IPR005225	Small GTP-binding domain	Domain
A, B, C	IPR024156	Small GTPase superfamily, ARF type	Family
A, B, C	IPR006689	Small GTPase superfamily, ARF/SAR type	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: Q9H0F7	retinitis pigmentosa Bardet-Biedl syndrome Bardet-Biedl syndrome 3 retinitis pigmentosa 55 intellectual disability Bardet-Biedl syndrome 1 ovarian cancer polydactyly acquired metabolic disease Ciliopathies gastric cancer malignant glioma oligodendroglioma Pick disease primitive neuroectodermal tumor retinitis pigmentosa Bardet-Biedl syndrome Bardet-Biedl syndrome 3 retinitis pigmentosa 55 intellectual disability Bardet-Biedl syndrome 1 ovarian cancer polydactyly acquired metabolic disease Ciliopathies gastric cancer malignant glioma oligodendroglioma Pick disease primitive neuroectodermal tumor astrocytic tumor cone-rod dystrophy gastric carcinoma large cell medulloblastoma medulloblastoma osteosarcoma pilocytic astrocytoma retinal degeneration atypical teratoid rhabdoid tumor glioblastoma malignant ependymoma obesity disorder

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.