2H3X

Crystal Structure of an Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes Faecalis (Form 3)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2h3xb_	Small proteins	Methylamine dehydrogenase, L chain	Methylamine dehydrogenase, L chain	automated matches	automated matches	(Alcaligenes faecalis ) [TaxId: 511 ],	SCOPe (2.08)
E	d2h3xe_	Small proteins	Methylamine dehydrogenase, L chain	Methylamine dehydrogenase, L chain	automated matches	automated matches	(Alcaligenes faecalis ) [TaxId: 511 ],	SCOPe (2.08)
C	d2h3xc_	All beta proteins	Cupredoxin-like	Cupredoxins	Plastocyanin/azurin-like	automated matches	(Alcaligenes faecalis ) [TaxId: 511 ],	SCOPe (2.08)
F	d2h3xf_	All beta proteins	Cupredoxin-like	Cupredoxins	Plastocyanin/azurin-like	automated matches	(Alcaligenes faecalis ) [TaxId: 511 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Methylamine dehydrogenase L chain	8078565	3000932	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Methylamine dehydrogenase L chain	8078565	3000932	SCOP2B (2022-06-29)
C	SCOP2 Family	Plastocyanin/azurin-like	8068788	4002150	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Cupredoxins	8068789	3000886	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	Cupredoxins	8068789	3000886	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF02975	e2h3xB1	A: few secondary structure elements	X: Methylamine dehydrogenase, L chain (From Topology)	H: Methylamine dehydrogenase, L chain (From Topology)	T: Methylamine dehydrogenase, L chain	F: PF02975	ECOD (1.6)
E	PF02975	e2h3xE1	A: few secondary structure elements	X: Methylamine dehydrogenase, L chain (From Topology)	H: Methylamine dehydrogenase, L chain (From Topology)	T: Methylamine dehydrogenase, L chain	F: PF02975	ECOD (1.6)
A	PF06433	e2h3xA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF06433	ECOD (1.6)
D	PF06433	e2h3xD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF06433	ECOD (1.6)
C	PF00127	e2h3xC1	A: beta sandwiches	X: Cupredoxin-like	H: Cupredoxin-related (From Topology)	T: Cupredoxin-related	F: PF00127	ECOD (1.6)
F	PF00127	e2h3xF1	A: beta sandwiches	X: Cupredoxin-like	H: Cupredoxin-related (From Topology)	T: Cupredoxin-related	F: PF00127	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.30.10	Mainly Beta	Sandwich	Electron Transport Ethylamine Dehydrogenase	Methylamine/Aralkylamine dehydrogenase light chain	CATH (4.3.0)
E	2.60.30.10	Mainly Beta	Sandwich	Electron Transport Ethylamine Dehydrogenase	Methylamine/Aralkylamine dehydrogenase light chain	CATH (4.3.0)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
D	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
C	2.60.40.420	Mainly Beta	Sandwich	Immunoglobulin-like	Cupredoxins - blue copper proteins	CATH (4.3.0)
F	2.60.40.420	Mainly Beta	Sandwich	Immunoglobulin-like	Cupredoxins - blue copper proteins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, E	PF02975	Methylamine dehydrogenase, L chain (Me-amine-dh_L)	Methylamine dehydrogenase, L chain	-	Domain
A, D	PF06433	Methylamine dehydrogenase heavy chain (MADH) (Me-amine-dh_H)	Methylamine dehydrogenase heavy chain (MADH)	-	Repeat
C, F	PF00127	Copper binding proteins, plastocyanin/azurin family (Copper-bind)	Copper binding proteins, plastocyanin/azurin family	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, E	Aromatic Amine Dehydrogenase	oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity amine dehydrogenase activity catalytic activity aralkylamine dehydrogenase (azurin) activity oxidoreductase activity, acting on the CH-NH2 group of donors, with a copper protein as acceptor	amine metabolic process organonitrogen compound metabolic process organic substance metabolic process metabolic process	periplasmic space cellular anatomical entity
A, D	Aromatic Amine Dehydrogenase	oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity amine dehydrogenase activity catalytic activity aralkylamine dehydrogenase (azurin) activity oxidoreductase activity, acting on the CH-NH2 group of donors, with a copper protein as acceptor	-	periplasmic space cellular anatomical entity
C, F	Azurin	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding electron transfer activity	-	periplasmic space cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, E	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
B, E	IPR016008	Amine dehydrogenase light chain	Family
B, E	IPR036560	Methylamine/Aralkylamine dehydrogenase light chain superfamily	Homologous Superfamily
B, E	IPR013504	Methylamine/Aralkylamine dehydrogenase light chain, C-terminal domain	Domain
A, D	IPR009451	Amine dehydrogenase heavy chain	Family
A, D	IPR011044	Quinoprotein amine dehydrogenase, beta chain-like	Homologous Superfamily
A, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
C, F	IPR000923	Blue (type 1) copper domain	Domain
C, F	IPR028871	Blue (type 1) copper protein, binding site	Binding Site
C, F	IPR008972	Cupredoxin	Homologous Superfamily
C, F	IPR014068	Azurin	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, E	TRQ	Parent Component: TRP RESID: AA0148 PSI-MOD : oxidation of tryptophan to L-tryptophyl quinone MOD:00157

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.