2H1O | pdb_00002h1o

Structure of FitAB bound to IR36 DNA fragment

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J [auth H]	d2h1oh1	All alpha proteins	Ribbon-helix-helix	Ribbon-helix-helix	Trafficking protein A-like	Trafficking protein A	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
I [auth G]	d2h1og1	All alpha proteins	Ribbon-helix-helix	Ribbon-helix-helix	Trafficking protein A-like	Trafficking protein A	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
H [auth F]	d2h1of1	All alpha proteins	Ribbon-helix-helix	Ribbon-helix-helix	Trafficking protein A-like	Trafficking protein A	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
G [auth E]	d2h1oe1	All alpha proteins	Ribbon-helix-helix	Ribbon-helix-helix	Trafficking protein A-like	Trafficking protein A	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
F [auth D]	d2h1od1	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Trafficking protein B	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
F [auth D]	d2h1od2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
E [auth C]	d2h1oc1	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Trafficking protein B	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
E [auth C]	d2h1oc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
D [auth B]	d2h1ob1	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Trafficking protein B	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
D [auth B]	d2h1ob2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
C [auth A]	d2h1oa1	Alpha and beta proteins (a/b)	PIN domain-like	PIN domain-like	PIN domain	Trafficking protein B	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)
C [auth A]	d2h1oa2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria gonorrhoeae ) [TaxId: 485 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth H]	SCOP2B Superfamily	Ribbon-helix-helix	8038515	3000295	SCOP2B (2022-06-29)
I [auth G]	SCOP2B Superfamily	Ribbon-helix-helix	8038515	3000295	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Ribbon-helix-helix	8038515	3000295	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Ribbon-helix-helix	8038515	3000295	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	PIN domain-like	8042130	3001041	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	PIN domain-like	8042130	3001041	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	PIN domain-like	8042130	3001041	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	PIN domain-like	8042130	3001041	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth H]	StbC	e2h1oH1	A: alpha arrays	X: HTH	H: HTH	T: Ribbon-helix-helix	F: StbC	ECOD (1.6)
I [auth G]	StbC	e2h1oG1	A: alpha arrays	X: HTH	H: HTH	T: Ribbon-helix-helix	F: StbC	ECOD (1.6)
H [auth F]	StbC	e2h1oF1	A: alpha arrays	X: HTH	H: HTH	T: Ribbon-helix-helix	F: StbC	ECOD (1.6)
G [auth E]	StbC	e2h1oE1	A: alpha arrays	X: HTH	H: HTH	T: Ribbon-helix-helix	F: StbC	ECOD (1.6)
F [auth D]	PIN	e2h1oD1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
E [auth C]	PIN	e2h1oC1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
D [auth B]	PIN	e2h1oB1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)
C [auth A]	PIN	e2h1oA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: PIN	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J [auth H]	1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	CATH (4.3.0)
I [auth G]	1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	CATH (4.3.0)
H [auth F]	1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	CATH (4.3.0)
G [auth E]	1.10.1220.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant	Met repressor-like	CATH (4.3.0)
F [auth D]	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
E [auth C]	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
D [auth B]	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
C [auth A]	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth E], H [auth F], I [auth G], J [auth H]	PF22513	Antitoxin FitA-like, ribbon-helix-helix (FitA-like_RHH)	Antitoxin FitA-like, ribbon-helix-helix	This domain is found in Antitoxin FitA from Neisseria gonorrhoeae and similar bacterial sequences. FitA is the antitoxin component of a type II toxin-antitoxin (TA) system. It binds DNA through its ribbon-helix-helix motif (this entry) [1].	Domain
C [auth A], D [auth B], E [auth C], F [auth D]	PF01850	PIN domain (PIN)	PIN domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth E], H [auth F], I [auth G], J [auth H]	Trafficking protein A	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity sequence-specific DNA binding DNA binding nucleic acid binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process biological process involved in interspecies interaction between organisms migration in host biological process involved in interaction with host biological process involved in symbiotic interaction	-
C [auth A], D [auth B], E [auth C], F [auth D]	Trafficking protein B	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding DNA binding nucleic acid binding nuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity	biological process involved in interspecies interaction between organisms migration in host biological process involved in interaction with host biological process involved in symbiotic interaction	-
B [auth V]	IR36-strand 2	-	-	-
A [auth U]	IR36-strand 1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth E], H [auth F], I [auth G], J [auth H]	IPR013321	Arc-type ribbon-helix-helix	Homologous Superfamily
G [auth E], H [auth F], I [auth G], J [auth H]	IPR010985	Ribbon-helix-helix	Homologous Superfamily
G [auth E], H [auth F], I [auth G], J [auth H]	IPR053853	Antitoxin FitA-like, ribbon-helix-helix	Domain
C [auth A], D [auth B], E [auth C], F [auth D]	IPR002716	PIN domain	Domain
C [auth A], D [auth B], E [auth C], F [auth D]	IPR029060	PIN-like domain superfamily	Homologous Superfamily
C [auth A], D [auth B], E [auth C], F [auth D]	IPR022907	VapC family	Family
C [auth A], D [auth B], E [auth C], F [auth D]	IPR050556	Type II toxin-antitoxin system RNase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.