Annotations: 2GT4

Crystal Structure of the Y103F mutant of the GDP-mannose mannosyl hydrolase in complex with GDP-mannose and MG+2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d2gt4c_	Alpha and beta proteins (a+b)	Nudix	Nudix	GDP-mannose mannosyl hydrolase NudD	GDP-mannose mannosyl hydrolase NudD	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d2gt4b_	Alpha and beta proteins (a+b)	Nudix	Nudix	GDP-mannose mannosyl hydrolase NudD	GDP-mannose mannosyl hydrolase NudD	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d2gt4a_	Alpha and beta proteins (a+b)	Nudix	Nudix	GDP-mannose mannosyl hydrolase NudD	GDP-mannose mannosyl hydrolase NudD	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Nudix	8038986	3000098	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nudix	8038986	3000098	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nudix	8038986	3000098	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	ACR_tran	e2gt4C1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.2)
B	ACR_tran	e2gt4B1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.2)
A	ACR_tran	e2gt4A1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
B	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
A	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00293	NUDIX domain (NUDIX)	NUDIX domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	GDP-mannose mannosyl hydrolase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding manganese ion binding transition metal ion binding hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds mannosidase activity hydrolase activity GDP-mannose mannosyl hydrolase activity catalytic activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding manganese ion binding transition metal ion binding hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds mannosidase activity hydrolase activity GDP-mannose mannosyl hydrolase activity catalytic activity GDP-glucosidase activity glucosidase activity identical protein binding protein binding protein homodimerization activity protein dimerization activity	lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process lipopolysaccharide metabolic process polysaccharide metabolic process biosynthetic process metabolic process lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process lipopolysaccharide metabolic process polysaccharide metabolic process biosynthetic process metabolic process cellular process macromolecule metabolic process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR000086	NUDIX hydrolase domain	Domain
A, B, C	IPR028613	GDP-mannose mannosyl hydrolase, Enterobacteria	Family
A, B, C	IPR015797	NUDIX hydrolase-like domain superfamily	Homologous Superfamily
A, B, C	IPR033715	GDP-mannose mannosyl hydrolase	Family
A, B, C	IPR020084	NUDIX hydrolase, conserved site	Conserved Site

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