2GRM | pdb_00002grm

Crystal structure of PrgX/iCF10 complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d2grmc1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
C	d2grmc2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	automated matches	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
B	d2grmb1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
B	d2grmb2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	automated matches	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
A	d2grma1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
A	d2grma2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	HTHP	e2grmC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (develop294)
B	Topoisom_I,Topo_C_assoc	e2grmB1	A: alpha bundles	X: EGF-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (develop294)
B		e2grmB2	A: alpha bundles	X: EGF-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (develop294)
A	Topoisom_I,Topo_C_assoc	e2grmA1	A: alpha bundles	X: EGF-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (develop294)
A		e2grmA2	A: alpha bundles	X: EGF-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
C	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
B	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
B	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
A	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
A	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, E	peptide	-	-	-
A, B, C	PrgX	DNA binding binding nucleic acid binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process	protein-containing complex transcription regulator complex transcription repressor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR001387	Cro/C1-type, helix-turn-helix domain	Domain
A, B, C	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B, C	IPR055234	Pheromone cCF10 receptor-like, TPR region	Domain
A, B, C	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.