2GOM | pdb_00002gom

Crystal structure of Efb-C from Staphylococcus aureus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2gomb_	All alpha proteins	Spectrin repeat-like	Efb C-domain-like	Efb C-domain-like	Fibrinogen-binding protein Efb (Fib)	(Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ],	SCOPe (2.08)
A	d2goma1	All alpha proteins	Spectrin repeat-like	Efb C-domain-like	Efb C-domain-like	Fibrinogen-binding protein Efb (Fib)	(Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Efb C-domain-like	8034095	3001178	SCOP2B (2022-06-29)
A	SCOP2 Family	Efb C-domain-like	8021715	4001263	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Efb C-domain-like	8034095	3001178	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	TFR_dimer	e2gomB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (v294.1)
A	efb-c	e2gomA1	A: alpha bundles	X: Spectrin repeat-like	H: Efb C-domain-like	T: Efb C-domain-like	F: efb-c	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.10.1270	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Sbi, C3 binding domain IV	CATH (4.3.0)
A	1.10.10.1270	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Sbi, C3 binding domain IV	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Fibrinogen-binding protein	protein binding binding complement binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR041909	Sbi, C3 binding domain IV	Homologous Superfamily
A, B	IPR021033	Extracellular fibrinogen binding protein, C-terminal	Domain
A, B	IPR036233	Efb, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.