2GNN

Crystal Structure of the Orf Virus NZ2 Variant of VEGF-E

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2gnna_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	(Orf virus (strain NZ2) ) [TaxId: 10259 ],	SCOPe (2.08)
B	d2gnnb_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	(Orf virus (strain NZ2) ) [TaxId: 10259 ],	SCOPe (2.08)
C	d2gnnc_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	(Orf virus (strain NZ2) ) [TaxId: 10259 ],	SCOPe (2.08)
D	d2gnnd_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	(Orf virus (strain NZ2) ) [TaxId: 10259 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cystine-knot cytokines	8070301	3000846	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cystine-knot cytokines	8070301	3000846	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cystine-knot cytokines	8070301	3000846	SCOP2B (2022-06-29)
D	SCOP2 Family	Platelet-derived growth factor-like	8070300	4003427	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Cystine-knot cytokines	8070301	3000846	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00341	e2gnnA1	A: few secondary structure elements	X: Cystine-knot cytokines (From Topology)	H: Cystine-knot cytokines (From Topology)	T: Cystine-knot cytokines	F: PF00341	ECOD (1.6)
B	PF00341	e2gnnB1	A: few secondary structure elements	X: Cystine-knot cytokines (From Topology)	H: Cystine-knot cytokines (From Topology)	T: Cystine-knot cytokines	F: PF00341	ECOD (1.6)
C	PF00341	e2gnnC1	A: few secondary structure elements	X: Cystine-knot cytokines (From Topology)	H: Cystine-knot cytokines (From Topology)	T: Cystine-knot cytokines	F: PF00341	ECOD (1.6)
D	PF00341	e2gnnD1	A: few secondary structure elements	X: Cystine-knot cytokines (From Topology)	H: Cystine-knot cytokines (From Topology)	T: Cystine-knot cytokines	F: PF00341	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.10.90.10	Mainly Beta	Ribbon	Cystine Knot Cytokines, subunit B	Cystine-knot cytokines	CATH (4.3.0)
B	2.10.90.10	Mainly Beta	Ribbon	Cystine Knot Cytokines, subunit B	Cystine-knot cytokines	CATH (4.3.0)
C	2.10.90.10	Mainly Beta	Ribbon	Cystine Knot Cytokines, subunit B	Cystine-knot cytokines	CATH (4.3.0)
D	2.10.90.10	Mainly Beta	Ribbon	Cystine Knot Cytokines, subunit B	Cystine-knot cytokines	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00341	PDGF/VEGF domain (PDGF)	PDGF/VEGF domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Vascular endothelial growth factor homolog	protein binding binding molecular function activator activity signaling receptor binding molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity	regulation of biological process regulation of cellular process positive regulation of cell division biological regulation positive regulation of biological process cellular process cell division positive regulation of cellular process regulation of cell division	membrane cellular anatomical entity extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR023581	Platelet-derived growth factor, conserved site	Conserved Site
A, B, C, D	IPR000072	PDGF/VEGF domain	Domain
A, B, C, D	IPR029034	Cystine-knot cytokine	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.