2GMG | pdb_00002gmg

Solution NMR Structure of protein PF0610 from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfG3

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2gmga1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	PF0610-like	Hypothetical protein PF0610	(Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ],	SCOPe (2.08)
A	d2gmga2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus furiosus DSM 3638 ) [TaxId: 186497 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PF0610-like	8003101	4000216	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Winged helix DNA-binding domain	8003102	3000034	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Rubredoxin-like	8056281	3001257	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	COG3357	e2gmgA2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: COG3357	ECOD (1.6)
A	Zn-ribbon_8_2	e2gmgA3	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Zn-ribbon_8_2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21476	PF0610-like, N-terminal (PF0610-like_N)	PF0610-like, N-terminal	This domain is found in PF0610 from Pyrococcus furiosus. This protein has a Zn ribbon-embedded wHTH fold. This entry represents the N-terminal winged HTH domain [1].	Domain
A	PF23470	PF0610 rubredoxin-like zinc beta-ribbon domain (Zn_ribbon_PF0610)	PF0610 rubredoxin-like zinc beta-ribbon domain	This rubredoxin-like zinc beta-ribbon domain is found in PF0610, a protein from the hyperthermophile Pyrococcus furiosus, and related homologous proteins. This domain is embedded in winged HTH fold [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR049159	PF0610-like, winged HTH, N-terminal	Domain
A	IPR038767	PF0610-like transcription regulator	Family
A	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A	IPR057022	PF0610-like, rubredoxin-like zinc beta-ribbon, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.