2GJ2 | pdb_00002gj2

Crystal Structure of VP9 from White Spot Syndrome Virus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	VP9-like	8089886	3002400	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	VP9-like	8089886	3002400	SCOP2B (2022-06-29)
C	SCOP2 Family	VP9-like	8045252	4004375	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	VP9-like	8089886	3002400	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	VP9-like	8089886	3002400	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Thioredoxin	e2gj2A1	A: alpha bundles	X: Carbon-nitrogen hydrolase-like	H: Metallo-dependent phosphatases	T: Metallo-dependent phosphatases	F: Thioredoxin	ECOD (develop294)
B	MarR	e2gj2B1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: MarR	ECOD (develop294)
C	MarR	e2gj2C1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: MarR	ECOD (develop294)
D	MarR	e2gj2D1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: MarR	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.2070	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	VP9 protein domain	CATH (4.3.0)
B	3.30.70.2070	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	VP9 protein domain	CATH (4.3.0)
C	3.30.70.2070	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	VP9 protein domain	CATH (4.3.0)
D	3.30.70.2070	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	VP9 protein domain	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR018587	White spot syndrome virus (WSSV), Orf116/126, N-terminal	Domain
A, B, C, D	IPR038362	VP9, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.