2GDV
Sucrose phosphorylase from BIFIDOBACTERIUM ADOLESCENTIS reacted with sucrose
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2gdva1 | All beta proteins | Glycosyl hydrolase domain | Glycosyl hydrolase domain | alpha-Amylases, C-terminal beta-sheet domain | Sucrose phosphorylase | (Bifidobacterium adolescentis ) [TaxId: 1680 ], | SCOPe (2.08) |
A | d2gdva2 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | Amylase, catalytic domain | Sucrose phosphorylase | (Bifidobacterium adolescentis ) [TaxId: 1680 ], | SCOPe (2.08) |
B | d2gdvb1 | All beta proteins | Glycosyl hydrolase domain | Glycosyl hydrolase domain | alpha-Amylases, C-terminal beta-sheet domain | Sucrose phosphorylase | (Bifidobacterium adolescentis ) [TaxId: 1680 ], | SCOPe (2.08) |
B | d2gdvb2 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | Amylase, catalytic domain | Sucrose phosphorylase | (Bifidobacterium adolescentis ) [TaxId: 1680 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8040419 | 3001528 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | (Trans)glycosidases | 8040420 | 3000313 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | (Trans)glycosidases | 8040420 | 3000313 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8040419 | 3001528 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DUF1964 | e2gdvA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: DUF1964 | ECOD (1.6) |
A | Alpha-amylase | e2gdvA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
B | DUF1964 | e2gdvB1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: DUF1964 | ECOD (1.6) |
B | Alpha-amylase | e2gdvB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 3.90.400.10 | Alpha Beta | Alpha-Beta Complex | Oligo-1,6-glucosidase | domain 2 | CATH (4.3.0) |
A | 2.20.220.10 | Mainly Beta | Single Sheet | Glycosyl hydrolase fold | alpha-Amylases | CATH (4.3.0) |
B | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
B | 3.90.400.10 | Alpha Beta | Alpha-Beta Complex | Oligo-1,6-glucosidase | domain 2 | CATH (4.3.0) |
B | 2.20.220.10 | Mainly Beta | Single Sheet | Glycosyl hydrolase fold | alpha-Amylases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00128 | Alpha amylase, catalytic domain (Alpha-amylase) | Alpha amylase, catalytic domain | Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... | Domain | |
PF09244 | Sucrose phosphorylase, C-terminal (Suc_Porlyase_C) | Sucrose phosphorylase, C-terminal | This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain which adopts a beta-sandwich fold with Greek-key topology [1,2,3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
sucrose phosphorylase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006047 | Glycosyl hydrolase, family 13, catalytic domain | Domain | |
IPR045857 | Oligo-1,6-glucosidase, domain 2 | Homologous Superfamily | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR015325 | Sucrose phosphorylase, C-terminal | Domain | |
IPR022527 | Sucrose phosphorylase | Family | |
IPR016377 | Sucrose/Glucosylglycerate phosphorylase-related | Family |