2G8L | pdb_00002g8l

Crystal structure of a duf89 family protein (ph1575) from pyrococcus horikoshii at 2.04 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2g8lb_	Multi-domain proteins (alpha and beta)	AF1104-like	AF1104-like	AF1104-like	Hypothetical protein PH1575	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
A	d2g8la1	Multi-domain proteins (alpha and beta)	AF1104-like	AF1104-like	AF1104-like	Hypothetical protein PH1575	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
A	d2g8la2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	AF1104-like	8041731	3001930	SCOP2B (2022-06-29)
A	SCOP2 Family	AF1104-like	8029352	4002947	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	AF1104-like	8041731	3001930	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF89_N_1	e2g8lB1	A: alpha bundles	X: alpha-helical domain in AF1104-like proteins (From Topology)	H: alpha-helical domain in AF1104-like proteins (From Topology)	T: alpha-helical domain in AF1104-like proteins	F: DUF89_N_1	ECOD (1.6)
B	DUF89_C	e2g8lB2	A: a/b three-layered sandwiches	X: Rossmann-like domain in AF1104-like proteins (From Topology)	H: Rossmann-like domain in AF1104-like proteins (From Topology)	T: Rossmann-like domain in AF1104-like proteins	F: DUF89_C	ECOD (1.6)
A	DUF89_N_1	e2g8lA1	A: alpha bundles	X: alpha-helical domain in AF1104-like proteins (From Topology)	H: alpha-helical domain in AF1104-like proteins (From Topology)	T: alpha-helical domain in AF1104-like proteins	F: DUF89_N_1	ECOD (1.6)
A	DUF89_C	e2g8lA2	A: a/b three-layered sandwiches	X: Rossmann-like domain in AF1104-like proteins (From Topology)	H: Rossmann-like domain in AF1104-like proteins (From Topology)	T: Rossmann-like domain in AF1104-like proteins	F: DUF89_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.8.380	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
B	1.10.285.20	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
B	3.40.50.10880	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein PF01937, DUF89, domain 3	CATH (4.3.0)
A	1.10.8.380	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A	1.10.285.20	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
A	3.40.50.10880	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Uncharacterised protein PF01937, DUF89, domain 3	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	287aa long hypothetical protein	hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR014444	Damage-control phosphatase PH1575-like	Family
A, B	IPR002791	Damage-control phosphatase ARMT1-like, metal-binding domain	Domain
A, B	IPR053636	Damage-control nucleotide phosphatase I	Family
A, B	IPR036075	Damage-control phosphatase ARMT1-like, metal-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.