2G59 | pdb_00002g59

Crystal Structure of the Catalytic Domain of Protein Tyrosine Phosphatase from Homo sapiens

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2g59b1	Alpha and beta proteins (a/b)	(Phosphotyrosine protein) phosphatases II	(Phosphotyrosine protein) phosphatases II	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2g59b3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2g59b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2g59a1	Alpha and beta proteins (a/b)	(Phosphotyrosine protein) phosphatases II	(Phosphotyrosine protein) phosphatases II	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2g59a3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2g59a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	(Phosphotyrosine protein) phosphatases II	8078053	3000304	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	(Phosphotyrosine protein) phosphatases II	8078053	3000304	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Hepar_II_III	e2g59B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.1)
A	tRNA-synt_1b	e2g59A1	A: a/b three-layered sandwiches	X: Globin-like	H: Globin-like	T: Globin-like	F: tRNA-synt_1b	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.90.190.10	Alpha Beta	Alpha-Beta Complex	Protein-Tyrosine Phosphatase	Chain A	CATH (4.3.0)
A	3.90.190.10	Alpha Beta	Alpha-Beta Complex	Protein-Tyrosine Phosphatase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00102	Protein-tyrosine phosphatase (Y_phosphatase)	Protein-tyrosine phosphatase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Receptor-type tyrosine-protein phosphatase O	phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity identical protein binding phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity cell adhesion molecule binding cadherin binding Wnt-protein binding	lamellipodium assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis cellular component assembly lamellipodium organization cellular process cellular component organization or biogenesis cell projection assembly renal filtration cell differentiation multicellular organismal process kidney epithelium development lamellipodium assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis cellular component assembly lamellipodium organization cellular process cellular component organization or biogenesis cell projection assembly renal filtration cell differentiation multicellular organismal process kidney epithelium development cellular developmental process glomerular epithelial cell differentiation epithelial cell differentiation renal system development multicellular organism development cell differentiation anatomical structure development nephron development system development nephron epithelium development epithelial cell differentiation involved in kidney development developmental process epithelium development animal organ development glomerular epithelium development tissue development glomerulus development cell differentiation involved in kidney development podocyte differentiation kidney development cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process signal transduction Wnt signaling pathway regulation of biological process regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway negative regulation of response to stimulus biological regulation negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication regulation of cellular component organization regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization regulation of biological quality slit diaphragm assembly filtration diaphragm assembly cell junction assembly cell-cell junction assembly cell-cell junction organization regulation of neuron projection development cell development neuron projection development neurogenesis neuron differentiation negative regulation of cell projection organization negative regulation of cellular component organization regulation of cell projection organization nervous system development negative regulation of neuron projection development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization renal system process system process regulation of renal system process regulation of system process regulation of glomerular filtration regulation of multicellular organismal process glomerular filtration renal filtration negative regulation of glomerular filtration negative regulation of multicellular organismal process anatomical structure morphogenesis cell morphogenesis cell chemotaxis chemotaxis response to external stimulus monocyte chemotaxis leukocyte migration cellular response to chemical stimulus taxis immune system process response to chemical mononuclear cell migration myeloid leukocyte migration cell migration cell motility leukocyte chemotaxis locomotion axonogenesis plasma membrane bounded cell projection morphogenesis cell projection morphogenesis neuron projection morphogenesis axon guidance axon development cell morphogenesis involved in neuron differentiation neuron projection guidance regulation of cell-substrate adhesion regulation of cell adhesion cell-substrate adhesion negative regulation of cell adhesion cell adhesion negative regulation of cell-substrate adhesion negative regulation of locomotion negative regulation of chemotaxis regulation of axon guidance regulation of retinal ganglion cell axon guidance regulation of locomotion negative regulation of response to external stimulus retinal ganglion cell axon guidance regulation of response to external stimulus negative regulation of retinal ganglion cell axon guidance negative regulation of axon guidance regulation of chemotaxis	postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic membrane asymmetric synapse plasma membrane region cell projection cell leading edge plasma membrane bounded cell projection lamellipodium apical part of cell apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle growth cone axon distal axon neuron projection site of polarized growth GABA-ergic synapse glutamatergic synapse neuron spine dendritic spine somatodendritic compartment dendrite dendritic tree lateral plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR042996	Receptor-type tyrosine-protein phosphatase O	Family
A, B	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
A, B	IPR016130	Protein-tyrosine phosphatase, active site	Active Site
A, B	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
A, B	IPR003961	Fibronectin type III	Domain
A, B	IPR000242	Tyrosine-specific protein phosphatase, PTPase domain	Domain
A, B	IPR000387	Tyrosine-specific protein phosphatases domain	Domain
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR058859	R-PTP-O-like, Fn3 domain	Domain
A, B	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q16827	nephrotic syndrome, type 6 melanoma Liver Cirrhosis, Experimental liver cancer astrocytic tumor cutaneous lupus erythematosus glioblastoma malignant ependymoma Pick disease atypical teratoid rhabdoid tumor cutaneous melanoma large cell medulloblastoma liver neoplasm medulloblastoma non-small cell lung carcinoma nephrotic syndrome, type 6 melanoma Liver Cirrhosis, Experimental liver cancer astrocytic tumor cutaneous lupus erythematosus glioblastoma malignant ependymoma Pick disease atypical teratoid rhabdoid tumor cutaneous melanoma large cell medulloblastoma liver neoplasm medulloblastoma non-small cell lung carcinoma ulcerative colitis B-cell chronic lymphocytic leukemia gastroesophageal reflux disease lung cancer ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.