Structure of Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d2fz1c_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tymoviridae-like VP | automated matches | (Turnip yellow mosaic virus (Australian isolate) ) [TaxId: 12155 ], | SCOPe (2.08) |
| B | d2fz1b_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tymoviridae-like VP | automated matches | (Turnip yellow mosaic virus (Australian isolate) ) [TaxId: 12155 ], | SCOPe (2.08) |
| A | d2fz1a_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tymoviridae-like VP | automated matches | (Turnip yellow mosaic virus (Australian isolate) ) [TaxId: 12155 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8067992 | 3000918 | SCOP2B (2022-06-29) |
| B | SCOP2 Family | Tymoviridae-like VP | 8067991 | 4003476 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8067992 | 3000918 | SCOP2 (2022-06-29) |
| A | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8067992 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Tymo_coat | e2fz1C1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Tymo_coat | ECOD (1.6) |
| B | Tymo_coat | e2fz1B1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Tymo_coat | ECOD (1.6) |
| A | Tymo_coat | e2fz1A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Tymo_coat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| B | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| A | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00983 | Tymovirus coat protein (Tymo_coat) | Tymovirus coat protein | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Coat protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR000574 | Tymovirus coat protein | Domain | |
| IPR029053 | Viral coat protein subunit | Homologous Superfamily |
