2FT1 | pdb_00002ft1

Bacteriophage HK97 Head II

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d2ft1e1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)
D	d2ft1d1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)
C	d2ft1c1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)
B	d2ft1b1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)
A	d2ft1a1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
A	SCOP2 Family	Major capsid protein gp5	8028911	4002638	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phage coat protein-like	8041290	3001529	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G		e2ft1G1	A: HTH	X: HTH	H: winged helix domain	T: CopC	F:	ECOD (20:10:01)
F		e2ft1F1	A: HTH	X: HTH	H: winged helix domain	T: CopC	F:	ECOD (20:10:01)
E		e2ft1E1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: ECH_1	F:	ECOD (20:10:01)
D		e2ft1D1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: ECH_1	F:	ECOD (20:10:01)
C		e2ft1C1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: ECH_1	F:	ECOD (20:10:01)
B		e2ft1B1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: ECH_1	F:	ECOD (20:10:01)
A		e2ft1A1	A: A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	X: A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	H: A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G	3.30.2400.10	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold	Major capsid protein gp5	CATH (4.3.0)
G	3.30.2320.10	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 domain	CATH (4.3.0)
F	3.30.2400.10	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold	Major capsid protein gp5	CATH (4.3.0)
F	3.30.2320.10	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 domain	CATH (4.3.0)
E	3.30.2400.10	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold	Major capsid protein gp5	CATH (4.3.0)
E	3.30.2320.10	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 domain	CATH (4.3.0)
D	3.30.2400.10	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold	Major capsid protein gp5	CATH (4.3.0)
D	3.30.2320.10	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 domain	CATH (4.3.0)
C	3.30.2400.10	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold	Major capsid protein gp5	CATH (4.3.0)
C	3.30.2320.10	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 domain	CATH (4.3.0)
B	3.30.2400.10	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold	Major capsid protein gp5	CATH (4.3.0)
B	3.30.2320.10	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 domain	CATH (4.3.0)
A	3.30.2400.10	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold	Major capsid protein gp5	CATH (4.3.0)
A	3.30.2320.10	Alpha Beta	2-Layer Sandwich	hypothetical protein PF0899 fold	hypothetical protein PF0899 domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF05065	Phage capsid family (Phage_capsid)	Phage capsid family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	major capsid protein	identical protein binding protein binding binding	virus maturation viral life cycle viral capsid assembly viral procapsid maturation cellular component biogenesis cellular component organization virion assembly cellular component assembly viral process cellular process cellular component organization or biogenesis	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR054612	Phage capsid-like, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR024455	Phage capsid	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.