Annotations: 2FOK

STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2foka1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	Restriction endonuclease FokI, N-terminal (recognition) domain	Restriction endonuclease FokI, N-terminal (recognition) domain	(Planomicrobium okeanokoites ) [TaxId: 244 ],	SCOPe (2.08)
A	d2foka4	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease FokI, C-terminal (catalytic) domain	Restriction endonuclease FokI, C-terminal (catalytic) domain	(Planomicrobium okeanokoites ) [TaxId: 244 ],	SCOPe (2.08)
B	d2fokb1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	Restriction endonuclease FokI, N-terminal (recognition) domain	Restriction endonuclease FokI, N-terminal (recognition) domain	(Planomicrobium okeanokoites ) [TaxId: 244 ],	SCOPe (2.08)
B	d2fokb4	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease FokI, C-terminal (catalytic) domain	Restriction endonuclease FokI, C-terminal (catalytic) domain	(Planomicrobium okeanokoites ) [TaxId: 244 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8002918	3000034	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8002916	3000034	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Restriction endonuclease-like	8002914	3000104	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8002920	3000034	SCOP2B (2022-06-29)
B	SCOP2 Family	FokI catalytic domain-like	8002913	4000280	SCOP2 (2022-06-29)
B	SCOP2 Family	FokI recognition domain-like	8091677	4000174	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Restriction endonuclease-like	8002914	3000104	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Winged helix DNA-binding domain	8002916	3000034	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Winged helix DNA-binding domain	8002918	3000034	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Winged helix DNA-binding domain	8002920	3000034	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FokI_D1	e2fokA1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: FokI_D1	ECOD (v294.2)
A	FokI_dom_2	e2fokA2	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: FokI_dom_2	ECOD (v294.2)
A	FokI_D3	e2fokA3	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: FokI_D3	ECOD (v294.2)
A	FokI_cleav_dom	e2fokA4	A: beta barrels	X: Restriction endonuclease-like	H: Restriction endonuclease-like	T: Restriction endonuclease-like	F: FokI_cleav_dom	ECOD (v294.2)
B	Pox_D5	e2fokB1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Pox_D5	ECOD (v294.2)
B	RecU	e2fokB4	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.241.10	Alpha Beta	Alpha-Beta Complex	FokI Restriction Endonuclease	Chain A, domain 1	CATH (4.3.0)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
A	3.40.91.30	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
B	3.90.241.10	Alpha Beta	Alpha-Beta Complex	FokI Restriction Endonuclease	Chain A, domain 1	CATH (4.3.0)
B	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
B	3.40.91.30	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	FOKI RESTRICTION ENDONUCLEASE	DNA binding binding nucleic acid binding endonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity DNA nuclease activity type II site-specific deoxyribonuclease activity restriction endodeoxyribonuclease activity DNA endonuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity DNA endonuclease activity, producing 5'-phosphomonoesters DNA binding binding nucleic acid binding endonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity DNA nuclease activity type II site-specific deoxyribonuclease activity restriction endodeoxyribonuclease activity DNA endonuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity DNA endonuclease activity, producing 5'-phosphomonoesters catalytic activity	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response DNA restriction-modification system defense response to symbiont response to external stimulus primary metabolic process clearance of foreign intracellular DNA clearance of foreign intracellular nucleic acids DNA metabolic process response to biotic stimulus nucleic acid metabolic process nucleobase-containing compound metabolic process DNA modification biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response DNA restriction-modification system defense response to symbiont response to external stimulus primary metabolic process clearance of foreign intracellular DNA clearance of foreign intracellular nucleic acids DNA metabolic process response to biotic stimulus nucleic acid metabolic process nucleobase-containing compound metabolic process DNA modification defense response to other organism response to stress macromolecule modification metabolic process cellular process response to external biotic stimulus macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004234	FokI, recognition domain, subdomain 1	Domain
A, B	IPR015334	FokI, cleavage domain	Domain
A, B	IPR011335	Restriction endonuclease type II-like	Homologous Superfamily
A, B	IPR004233	FokI, recognition domain, subdomain 2	Domain
A, B	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR031655	FokI, D3 domain	Domain
A, B	IPR044945	FokI, recognition domain, subdomain 1 and 2	Homologous Superfamily

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	type II site-specific deoxyribonuclease FokI M-CSA #927	FokI is a member an unusual class of restriction enzymes that recognise a specific DNA sequence and cleave non-specifically a short distance away from that sequence. FokI consists of an N-terminal DNA recognition domain and a C-terminal cleavage domain.	Defined by 3 residues: ASP:A-450ASP:A-467LYS:A-469 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 3.1.21.4 (PDB Primary Data) Search M-CSA Motif + EC 3.1.21.4

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.