2F9C | pdb_00002f9c

Crystal structure of YDCK from Salmonella cholerae. NESG target SCR6

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2f9cb1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	YdcK-like	automated matches	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)
B	d2f9cb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)
A	d2f9ca1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	YdcK-like	Hypothetical protein YdcK	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8040693	3001804	SCOP2B (2022-06-29)
A	SCOP2 Family	YdcK-like	8028314	4002093	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Trimeric LpxA-like enzymes	8040693	3001804	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e2f9cB1	A: HTH	X: HTH	H: winged helix domain	T: MATH_2	F:	ECOD (20:10:01)
A		e2f9cA1	A: Single-stranded left-handed beta-helix	X: Trimeric LpxA-like enzymes	H: Trimeric LpxA-like enzymes	T: B_solenoid_ydck	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hypothetical protein YDCK	transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups acyltransferase activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR050065	Bifunctional protein GlmU-like	Family
A, B	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
A, B	IPR048014	YdcK-like	Family
A, B	IPR040831	YdcK Beta solenoid repeat	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.