2EZD

SOLUTION STRUCTURE OF A COMPLEX OF THE SECOND DNA BINDING DOMAIN OF HUMAN HMG-I(Y) BOUND TO DNA DODECAMER CONTAINING THE PRDII SITE OF THE INTERFERON-BETA PROMOTER, NMR, MINIMIZED AVERAGE STRUCTURE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth A]	d2ezda_	Peptides	DNA-binding domains of HMG-I(Y)	DNA-binding domains of HMG-I(Y)	DNA-binding domains of HMG-I(Y)	DNA-binding domains of HMG-I(Y)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	DNA (5'-D(GPGPGPAPAPAPTPTPCPCPTPC)-3')	-	-	-
B [auth C]	DNA (5'-D(GPAPGPGPAPAPTPTPTPCPCPC)-3')	-	-	-
C [auth A]	HIGH MOBILITY GROUP PROTEIN HMG-I/HMG-Y	protein binding binding signaling receptor binding peroxisome proliferator activated receptor binding catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid 5'-deoxyribose-5-phosphate lyase activity lyase activity catalytic activity carbon-oxygen lyase activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding signaling receptor binding peroxisome proliferator activated receptor binding catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid 5'-deoxyribose-5-phosphate lyase activity lyase activity catalytic activity carbon-oxygen lyase activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity DNA binding sequence-specific DNA binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding organic cyclic compound binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein-containing complex binding chromatin binding transcription coactivator activity transcription factor binding nuclear retinoic acid receptor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding DNA-binding transcription factor binding transcription coregulator binding structural molecule activity structural constituent of chromatin nuclear retinoid X receptor binding DNA secondary structure binding minor groove of adenine-thymine-rich DNA binding DNA-(apurinic or apyrimidinic site) endonuclease activity DNA binding, bending molecular function activator activity molecular function regulator activity nuclear receptor coactivator activity enzyme binding	regulation of cellular process negative regulation of biological process negative regulation of nitrogen compound metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process regulation of nitrogen compound metabolic process DNA-templated transcription regulation of RNA metabolic process heterocycle metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of cellular process negative regulation of biological process negative regulation of nitrogen compound metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process regulation of nitrogen compound metabolic process DNA-templated transcription regulation of RNA metabolic process heterocycle metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of biological process cellular metabolic process negative regulation of metabolic process cellular nitrogen compound metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process aromatic compound biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process negative regulation of cellular process nitrogen compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process heterocycle biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process cellular process cellular aromatic compound metabolic process cellular component disassembly protein-containing complex organization protein-DNA complex disassembly protein-containing complex disassembly protein-DNA complex organization cellular component organization chromatin organization nucleosome disassembly chromatin remodeling cellular component organization or biogenesis nucleosome organization cellular response to stimulus cellular response to stress response to stimulus response to stress cellular senescence oncogene-induced cell senescence negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation DNA metabolic process base-excision repair DNA damage response DNA repair positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of cellular process positive regulation of nitrogen compound metabolic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II DNA geometric change DNA conformation change DNA duplex unwinding DNA-templated DNA replication chromosome organization DNA unwinding involved in DNA replication organelle organization DNA replication	anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle organelle protein-DNA complex chromatin chromosome senescence-associated heterochromatin focus heterochromatin intracellular non-membrane-bounded organelle non-membrane-bounded organelle cytoplasm cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A]	IPR000116	High mobility group protein HMGA	Family
C [auth A]	IPR017956	AT hook, DNA-binding motif	Conserved Site
C [auth A]	IPR000637	HMG-I/HMG-Y, DNA-binding, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth A]	Pharos: P17096	metabolic syndrome X Insulin Resistance type 2 diabetes mellitus leiomyosarcoma uterine cancer epithelioid leiomyosarcoma myxoid leiomyosarcoma hyperglycemia neoplasm osteosarcoma pancreatic intraductal papillary-mucinous carcinoma atrial fibrillation invasive ductal breast carcinoma lung cancer malignant glioma metabolic syndrome X Insulin Resistance type 2 diabetes mellitus leiomyosarcoma uterine cancer epithelioid leiomyosarcoma myxoid leiomyosarcoma hyperglycemia neoplasm osteosarcoma pancreatic intraductal papillary-mucinous carcinoma atrial fibrillation invasive ductal breast carcinoma lung cancer malignant glioma non-alcoholic fatty liver disease ovarian cancer schizophrenia glioblastoma large cell medulloblastoma malignant colon neoplasm malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic ductal adenocarcinoma ductal breast carcinoma in situ malignant ependymoma maturity-onset diabetes of the young

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.