2EFW
Crystal structure of the RTP:nRB complex from Bacillus subtilis
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | d2efwa_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Replication terminator protein (RTP) | Replication terminator protein (RTP) | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
F [auth B] | d2efwb_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Replication terminator protein (RTP) | Replication terminator protein (RTP) | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
G [auth F] | d2efwf_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Replication terminator protein (RTP) | Replication terminator protein (RTP) | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
H [auth G] | d2efwg_ | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Replication terminator protein (RTP) | Replication terminator protein (RTP) | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002806 | 3000034 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002806 | 3000034 | SCOP2B (2022-06-29) |
G [auth F] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002806 | 3000034 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002806 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | PF02334 | e2efwA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF02334 | ECOD (1.6) |
F [auth B] | PF02334 | e2efwB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF02334 | ECOD (1.6) |
G [auth F] | PF02334 | e2efwF1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF02334 | ECOD (1.6) |
H [auth G] | PF02334 | e2efwG1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF02334 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth A] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
F [auth B] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
G [auth F] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
H [auth G] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth B], G [auth F], H [auth G] | PF02334 | Replication terminator protein (RTP) | Replication terminator protein | The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth D], C [auth I] | DNA (5'-D(*DCP*DT*DAP*DTP*DGP*DTP*DAP*DCP*DCP*DAP*DAP*DAP*DTP*DGP*DTP*DTP*DCP*DAP*DGP*DTP*DC)-3') | - | - | - |
B [auth E], D [auth J] | DNA (5'-D(*DGP*DAP*DCP*DTP*DGP*DAP*DAP*DCP*DAP*DTP*DTP*DTP*DGP*DGP*DTP*DAP*DCP*DAP*DTP*DAP*DG)-3') | - | - | - |
E [auth A], F [auth B], G [auth F], H [auth G] | Replication termination protein |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
E [auth A], F [auth B], G [auth F], H [auth G] | IPR003432 | Replication terminator protein | Family |
E [auth A], F [auth B], G [auth F], H [auth G] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
E [auth A], F [auth B], G [auth F], H [auth G] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |