2EC2 | pdb_00002ec2

Crystal structure of transposase from Sulfolobus tokodaii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2ec2f_	Alpha and beta proteins (a+b)	Ferredoxin-like	Transposase IS200-like	Transposase IS200-like	automated matches	(Sulfurisphaera tokodaii ) [TaxId: 111955 ],	SCOPe (2.08)
E	d2ec2e_	Alpha and beta proteins (a+b)	Ferredoxin-like	Transposase IS200-like	Transposase IS200-like	automated matches	(Sulfurisphaera tokodaii ) [TaxId: 111955 ],	SCOPe (2.08)
D	d2ec2d_	Alpha and beta proteins (a+b)	Ferredoxin-like	Transposase IS200-like	Transposase IS200-like	automated matches	(Sulfurisphaera tokodaii ) [TaxId: 111955 ],	SCOPe (2.08)
C	d2ec2c_	Alpha and beta proteins (a+b)	Ferredoxin-like	Transposase IS200-like	Transposase IS200-like	automated matches	(Sulfurisphaera tokodaii ) [TaxId: 111955 ],	SCOPe (2.08)
B	d2ec2b_	Alpha and beta proteins (a+b)	Ferredoxin-like	Transposase IS200-like	Transposase IS200-like	automated matches	(Sulfurisphaera tokodaii ) [TaxId: 111955 ],	SCOPe (2.08)
A	d2ec2a_	Alpha and beta proteins (a+b)	Ferredoxin-like	Transposase IS200-like	Transposase IS200-like	automated matches	(Sulfurisphaera tokodaii ) [TaxId: 111955 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Transposase IS200-like	8088141	3001347	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Transposase IS200-like	8088141	3001347	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Transposase IS200-like	8088141	3001347	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Transposase IS200-like	8088141	3001347	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Transposase IS200-like	8088141	3001347	SCOP2B (2022-06-29)
A	SCOP2 Family	Transposase IS200-like	8088140	4003718	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Transposase IS200-like	8088141	3001347	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	HTHP	e2ec2F1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
E	HTHP	e2ec2E1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
D	HTHP	e2ec2D1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
C	HTHP	e2ec2C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
B	HTHP	e2ec2B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)
A	Cyt-b5	e2ec2A1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cyt-b5	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)
E	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)
D	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)
C	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)
B	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)
A	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01797	Transposase IS200 like (Y1_Tnp)	Transposase IS200 like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	136aa long hypothetical transposase	DNA binding binding nucleic acid binding transposase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity	nucleobase-containing compound metabolic process DNA recombination cellular process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process transposition DNA transposition nucleic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036515	Transposase IS200-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002686	Transposase IS200-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.