Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth X]SCOP2 FamilyPMT C-terminal domain like8021528 4002524 SCOP2 (2022-06-29)
A [auth X]SCOP2 FamilyPMT central region-like8021525 4001607 SCOP2 (2022-06-29)
A [auth X]SCOP2 FamilyPMT domain-like8021527 4002144 SCOP2 (2022-06-29)
A [auth X]SCOP2 SuperfamilyCysteine proteinases8033908 3001808 SCOP2 (2022-06-29)
A [auth X]SCOP2 SuperfamilyPMT central region-like8033905 3001977 SCOP2 (2022-06-29)
A [auth X]SCOP2 SuperfamilyEreA/ChaN-like8033907 3000873 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth X]MLDe2ebfX1 A: alpha bundlesX: Bromodomain-likeH: PMT helical bundle domain-likeT: PMT helical bundle domain-likeF: MLDECOD (1.6)
A [auth X]EUF08248e2ebfX2 A: alpha complex topologyX: PMT central region-like (From Topology)H: PMT central region-like (From Topology)T: PMT central region-likeF: EUF08248ECOD (1.6)
A [auth X]Tox-PLDMTXe2ebfX3 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Tox-PLDMTXECOD (1.6)
A [auth X]EUF08646e2ebfX4 A: a/b three-layered sandwichesX: EreA/ChaN-like (From Topology)H: EreA/ChaN-like (From Topology)T: EreA/ChaN-likeF: EUF08646ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth X]3.10.670.10 Alpha Beta Roll Secreted effector protein ssei fold Secreted effector protein ssei.CATH (4.3.0)
A [auth X]1.20.140.180 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A domain 3CATH (4.3.0)
A [auth X]3.40.50.11550 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth X]PF20900Pasteurella multocida toxin, C3 domain (PMT_C3)Pasteurella multocida toxin, C3 domainPasteurella multocida toxin (PMT) inhibits osteoblastic differentiation in mammals and birds. Its N-terminal region binds to target cells, while its C-terminal region, with a Trojan horse-like shape, carries the intracellularly active moiety. The lat ...Pasteurella multocida toxin (PMT) inhibits osteoblastic differentiation in mammals and birds. Its N-terminal region binds to target cells, while its C-terminal region, with a Trojan horse-like shape, carries the intracellularly active moiety. The latter consists of three distinct domains: C1 (Pfam:PF11647), C2 and C3. This entry represents the C-terminal catalytic domain C3, which has a Cys-His-Asp triad known to perform acyl-hydrolysis such as peptidase activity or an acyl-transfer reaction. This domain adopts a typical alpha-beta protein fold with seven beta-strands and eight helices. It is organised into two subdomains that form the the biologically active cleft space [1,2].
Domain
A [auth X]PF20899Pasteurella multocida toxin, C2 domain (PMT_C2)Pasteurella multocida toxin, C2 domainPasteurella multocida toxin (PMT) inhibits osteoblastic differentiation in mammals and birds. Its N-terminal region binds to target cells, while its C-terminal region, with a Trojan horse-like shape, carries the intracellularly active moiety. The lat ...Pasteurella multocida toxin (PMT) inhibits osteoblastic differentiation in mammals and birds. Its N-terminal region binds to target cells, while its C-terminal region, with a Trojan horse-like shape, carries the intracellularly active moiety. The latter consists of three distinct domains: C1 (Pfam:PF11647), C2 and C3. This entry represents the larger of these domains, the central region C2, which has 18 helices and nine beta-strands and is organised into two subdomains with typical alpha-beta structures characteristic of nucleotide-binding proteins [1]. This domain is also found in the Ras/Rap1-specific endopeptidase (RRSP), an effector domain from the multifunctional-autoprocessing repeats-in- toxin (MARTX) toxin from Vibrio vulnificus responsible for the disruption of host innate immune defenses during infection [2,3].
Domain
A [auth X]PF11647Membrane Localization Domain (MLD)Membrane Localization DomainThis is a membrane localization domain found in multiple families of bacterial toxins including all of the clostridial glucosyltransferase toxins and various MARTX toxins (multifunctional-autoprocessing RTX toxins) [1,4]. In the Pasteurella multocida ...This is a membrane localization domain found in multiple families of bacterial toxins including all of the clostridial glucosyltransferase toxins and various MARTX toxins (multifunctional-autoprocessing RTX toxins) [1,4]. In the Pasteurella multocida toxin (PMT) C-terminal fragment, structural analysis have indicated that the C1 domain possesses a signal that leads the toxin to the cell membrane. Furthermore, the C1 domain was found to structurally resemble the phospholipid-binding domain of C. difficile toxin B [2]. Functional studies in Vibrio cholera indicate that the subdomain at the N terminus of RID (Rho-inactivation domain), homologous to the membrane targeting C1 domain of Pasteurella multocida toxin, is a conserved membrane localization domain essential for proper localization [1]. The Rho-inactivation domain (RID) of MARTX (Multifunctional Autoprocessing RTX toxin) is responsible for inactivating the Rho-family of small GTPases in Vibrio cholerae. It is a bacterial toxin that self-process by a cysteine peptidase mechanism [3]. The Vibrio cholerae RTX toxin is an autoprocessing cysteine protease whose activity is stimulated by the intracellular environment [3]. This cysteine peptidase belongs to MEROPS peptidase family G6.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth X]Dermonecrotic toxin