2EAQ | pdb_00002eaq

Crystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PDZ	e2eaqA1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	LIM domain only protein 7	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding ion binding binding metal ion binding small molecule binding	regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process regulation of signaling signaling primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process regulation of signaling signaling primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle anchoring junction cell junction focal adhesion cell-substrate junction organelle envelope nuclear envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle anchoring junction cell junction focal adhesion cell-substrate junction organelle envelope nuclear envelope nucleus endomembrane system cell periphery apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane cell surface cytosol protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR003096	Smooth muscle protein/calponin	Family
A	IPR031865	Domain of unknown function DUF4757	Domain
A	IPR036034	PDZ superfamily	Homologous Superfamily
A	IPR036872	CH domain superfamily	Homologous Superfamily
A	IPR001715	Calponin homology domain	Domain
A	IPR001478	PDZ domain	Domain
A	IPR001781	Zinc finger, LIM-type	Domain
A	IPR029978	LIM domain only protein 7	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q8WWI1	pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma spina bifida amyotrophic lateral sclerosis colorectal cancer interstitial lung disease lung cancer malignant glioma non-small cell lung carcinoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor astrocytic tumor cystic fibrosis large cell medulloblastoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma spina bifida amyotrophic lateral sclerosis colorectal cancer interstitial lung disease lung cancer malignant glioma non-small cell lung carcinoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor astrocytic tumor cystic fibrosis large cell medulloblastoma lung carcinoma malignant pancreatic neoplasm oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia sinusitis atypical teratoid rhabdoid tumor glioblastoma lung adenocarcinoma malignant ependymoma medulloblastoma open-angle glaucoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.