2E84 | pdb_00002e84

Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) in the presence of zinc ion

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2e84a_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Cytochrome c3-like	automated matches	(Nitratidesulfovibrio vulgaris str. 'Miyazaki F ) [TaxId: 883 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	HmcA-like	8079014	4007713	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c3-like	8090742	3002451	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c3-like	8090741	3002451	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c3-like	8090743	3002451	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c3-like	8079015	3002451	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PARP	e2e84A1	A: a/b three-layered sandwiches	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: PARP	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.10.10	Alpha Beta	Alpha-Beta Complex	Cytochrome C3	Cytochrome C3	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	High-molecular-weight cytochrome c	binding tetrapyrrole binding heme binding electron transfer activity cation binding ion binding metal ion binding small molecule binding	-	cellular anatomical structure cell envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR051829	Multiheme_Cytochr_ET	Unknown
A	IPR020942	Class III cytochrome C	Domain
A	IPR036280	Multiheme cytochrome superfamily	Homologous Superfamily
A	IPR054813	Sulfate respiration complex hexadecaheme cytochrome HmcA	Family
A	IPR002322	Cytochrome c, class III	Family
A	IPR011346	High-molecular-weight cytochrome c	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.