2E7S | pdb_00002e7s

Crystal structure of the yeast Sec2p GEF domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
T	d2e7st_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
S	d2e7ss_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
R	d2e7sr_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
Q	d2e7sq_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
P	d2e7sp_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
O	d2e7so_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
N	d2e7sn_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
M	d2e7sm_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
L	d2e7sl_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
K	d2e7sk_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
J	d2e7sj_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
I	d2e7si_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
H	d2e7sh_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
G	d2e7sg_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
F	d2e7sf_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
E	d2e7se_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
D	d2e7sd_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
C	d2e7sc_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
B	d2e7sb_	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	automated matches	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
A	d2e7sa1	Coiled coil proteins	Parallel coiled-coil	Sec2 N-terminal region	Sec2 N-terminal region	Rab guanine nucleotide exchange factor Sec2	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
T	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2B (2022-06-29)
A	SCOP2 Family	Sec2 N-terminal region	8027639	4000562	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Sec2 N-terminal region	8040018	3000591	SCOP2 (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF06428	GDP/GTP exchange factor Sec2p (Sec2p)	GDP/GTP exchange factor Sec2p	-	Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	Rab guanine nucleotide exchange factor SEC2	GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol-4-phosphate binding phosphatidylinositol binding identical protein binding protein binding	sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation catabolic process autophagy cellular process metabolic process process utilizing autophagic mechanism localization establishment of protein localization nitrogen compound transport sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation catabolic process autophagy cellular process metabolic process process utilizing autophagic mechanism localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization sexual reproduction cellular developmental process cellular component assembly involved in morphogenesis reproductive process cell development ascospore-type prospore membrane formation developmental process involved in reproduction membrane biogenesis meiotic cell cycle process cellular component organization cellular component biogenesis cellular anatomical entity morphogenesis cellular component assembly sexual sporulation cell differentiation cellular component organization or biogenesis cell cycle cell cycle process membrane organization sexual sporulation resulting in formation of a cellular spore reproductive process in single-celled organism meiotic cell cycle membrane assembly ascospore formation ascospore-type prospore assembly secretion by cell exocytosis secretion export from cell vesicle-mediated transport	cellular anatomical structure cell tip cell pole cellular bud cellular bud tip site of polarized growth cell projection mating projection mating projection tip plasma membrane bounded cell projection intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle cellular anatomical structure cell tip cell pole cellular bud cellular bud tip site of polarized growth cell projection mating projection mating projection tip plasma membrane bounded cell projection intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle transport vesicle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle vesicle cellular bud neck

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR009449	GDP/GTP exchange factor Sec2, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR040351	Guanine nucleotide exchange factor RAB3IL/RAB3IP/Sec2	Family