2DYB | pdb_00002dyb

The crystal structure of human p40(phox)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	SH3-domain	8062117	3000153	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PX domain	8036330	3001006	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CAD & PB1 domains	8037415	3000318	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PX domain	8036330	3001006	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SH3-domain	8062117	3000153	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	ACR_tran	e2dybB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
B	N-glycanase_C	e2dybB5	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: N-glycanase_C	ECOD (develop294)
A	ACR_tran	e2dybA1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
A	Peptidase_M49	e2dybA4	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	CATH (4.3.0)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
B	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	CATH (4.3.0)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00787	PX domain (PX)	PX domain	PX domains bind to phosphoinositides.	Domain
A, B	PF00018	SH3 domain (SH3_1)	SH3 domain	SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.	Domain
A, B	PF00564	PB1 domain (PB1)	PB1 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Neutrophil cytosol factor 4	superoxide-generating NADPH oxidase activator activity enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity binding phospholipid binding lipid binding phosphatidylinositol-3-phosphate binding phosphatidylinositol phosphate binding phosphatidylinositol binding	superoxide metabolic process superoxide anion generation reactive oxygen species metabolic process metabolic process cellular process localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport respiratory burst	cellular anatomical structure membrane membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle secondary lysosome cellular anatomical structure membrane membrane-bounded organelle phagolysosome intracellular anatomical structure lytic vacuole intracellular vesicle vacuole phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle secondary lysosome cytoplasm vesicle endocytic vesicle lysosome cytosol endosome membrane endosome endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane cell periphery plasma membrane protein-containing complex catalytic complex plasma membrane protein complex NADPH oxidase complex membrane protein complex oxidoreductase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000919	Neutrophil cytosol factor P40	Family
A, B	IPR034912	Neutrophil cytosol factor 4, PX domain	Domain
A, B	IPR051228	NADPH Oxidase and PX Domain-Containing	Family
A, B	IPR001683	Phox homology	Domain
A, B	IPR000270	PB1 domain	Domain
A, B	IPR053793	PB1-like domain	Domain
A, B	IPR036871	PX domain superfamily	Homologous Superfamily
A, B	IPR001452	SH3 domain	Domain
A, B	IPR034853	Neutrophil cytosol factor P40, PB1 domain	Domain
A, B	IPR035541	Neutrophil cytosol factor P40, SH3 domain	Domain
A, B	IPR036028	SH3-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q15080	chronic granulomatous disease Crohn disease granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 3 heart disease periodontitis Regional enteritis acute myeloid leukemia glioblastoma ileocolitis lung cancer non-small cell lung carcinoma phagocyte bactericidal dysfunction tuberculosis adrenal cortex carcinoma interstitial cystitis chronic granulomatous disease Crohn disease granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 3 heart disease periodontitis Regional enteritis acute myeloid leukemia glioblastoma ileocolitis lung cancer non-small cell lung carcinoma phagocyte bactericidal dysfunction tuberculosis adrenal cortex carcinoma interstitial cystitis lung carcinoma osteosarcoma pilocytic astrocytoma ulcerative colitis allergic rhinitis Crohn's colitis cutaneous lupus erythematosus invasive ductal breast carcinoma malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.