2DS0 | pdb_00002ds0

Crystal structure of the earthworm lectin C-terminal domain mutant in complex with 6'-sialyllactose

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd2ds0b_ All beta proteins beta-Trefoil Ricin B-like lectins Ricin B-like automated matches common earthworm (Lumbricus terrestris ) [TaxId: 6398 ], SCOPe (2.08)
Ad2ds0a_ All beta proteins beta-Trefoil Ricin B-like lectins Ricin B-like automated matches common earthworm (Lumbricus terrestris ) [TaxId: 6398 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRicin B-like lectins 8038753 3000678 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRicin B-like lectins 8038753 3000678 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BHTHPe2ds0B1 A: alpha bundlesX: HTHH: NudixT: NudixF: HTHPECOD (develop294)
AHTHPe2ds0A1 A: alpha bundlesX: HTHH: NudixT: NudixF: HTHPECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.80.10.50 Mainly Beta Trefoil Trefoil (Acidic Fibroblast Growth Factor, subunit A) CATH (4.3.0)
A2.80.10.50 Mainly Beta Trefoil Trefoil (Acidic Fibroblast Growth Factor, subunit A) CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
29-kDa galactose-binding lectin - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR035992Ricin B-like lectinsHomologous Superfamily
A, B
IPR000772Ricin B, lectin domainDomain