2DR3 | pdb_00002dr3

Crystal Structure of RecA superfamily ATPase PH0284 from Pyrococcus horikoshii OT3

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RecA-like P-loop NTPases	8056653	3002019	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RecA-like P-loop NTPases	8056653	3002019	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RecA-like P-loop NTPases	8056653	3002019	SCOP2B (2022-06-29)
D	SCOP2 Family	RecA/Rad51/KaiC-like ATPases	8056652	4004007	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	RecA-like P-loop NTPases	8056653	3002019	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	RecA-like P-loop NTPases	8056653	3002019	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RecA-like P-loop NTPases	8056653	3002019	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Transketolase_C	e2dr3A1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Transketolase_C	ECOD (v294.1)
B	Sigma70_r4_2	e2dr3B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Sigma70_r4_2	ECOD (v294.1)
C	Sigma70_r4_2	e2dr3C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Sigma70_r4_2	ECOD (v294.1)
D	Sigma70_r4_2	e2dr3D1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Sigma70_r4_2	ECOD (v294.1)
E	Sigma70_r4_2	e2dr3E1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Sigma70_r4_2	ECOD (v294.1)
F	Sigma70_r4_2	e2dr3F1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Sigma70_r4_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
D	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
E	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
F	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	UPF0273 protein PH0284	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR003593	AAA+ ATPase domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR014774	KaiC-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR010624	KaiC domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR022475	Uncharacterised protein family UPF0273, KaiC-like	Family
A, B, C, D, E A, B, C, D, E, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.