2DPP | pdb_00002dpp

Crystal structure of thermostable Bacillus sp. RAPc8 nitrile hydratase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2dppb_	All beta proteins	SH3-like barrel	Electron transport accessory proteins	Nitrile hydratase beta chain	automated matches	(Bacillus sp. RAPc8 ) [TaxId: 218609 ],	SCOPe (2.08)
A	d2dppa_	Alpha and beta proteins (a+b)	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain	automated matches	(Bacillus sp. RAPc8 ) [TaxId: 218609 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Nitrile hydratase beta chain	8077356	4001743	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Electron transport accessory proteins	8077357	3000325	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Nitrile hydratase alpha chain	8042963	3000945	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	N-glycanase_C	e2dppB2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: N-glycanase_C	ECOD (v294.1)
A	Phospholip_A2_1	e2dppA1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Phospholip_A2_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.472.20	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
B	2.30.30.50	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
A	3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Nitrile hydratase beta subunit	hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity nitrile hydratase activity cation binding transition metal ion binding ion binding binding metal ion binding small molecule binding	-	-
A	Nitrile hydratase alpha subunit	hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity nitrile hydratase activity cation binding transition metal ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR003168	Nitrile hydratase, beta subunit	Family
B	IPR049054	Nitrile hydratase beta subunit-like, N-terminal domain	Domain
B	IPR008990	Electron transport accessory-like domain superfamily	Homologous Superfamily
B	IPR042262	Nitrile hydratase beta subunit, N-terminal	Homologous Superfamily
B	IPR024690	Nitrile hydratase beta subunit domain	Domain
A	IPR004232	Nitrile hydratase alpha/Thiocyanate hydrolase gamma	Domain
A	IPR036648	Nitrile hydratase alpha /Thiocyanate hydrolase gamma superfamily	Homologous Superfamily
A	IPR018141	Nitrile hydratase, alpha subunit	Family
A	IPR023900	Nitrile hydratase alpha subunit /Thiocyanate hydrolase gamma subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	CSD	Parent Component: CYS RESID: AA0262 PSI-MOD : L-cysteine sulfinic acid MOD:00267
A	CSO	Parent Component: CYS RESID: AA0262 , AA0205 PSI-MOD : L-cysteine sulfinic acid MOD:00267 , L-cysteine sulfenic acid MOD:00210

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.