2DE5 | pdb_00002de5

Crystal structure of the electron transfer complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2de5a1	All beta proteins	ISP domain	ISP domain	Ring hydroxylating alpha subunit ISP domain	Terminal oxygenase component of carbazole CarAa	(Janthinobacterium ) [TaxId: 29580 ],	SCOPe (2.08)
A	d2de5a2	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	Ring hydroxylating alpha subunit catalytic domain	Terminal oxygenase component of carbazole CarAa	(Janthinobacterium ) [TaxId: 29580 ],	SCOPe (2.08)
A	d2de5a3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Janthinobacterium ) [TaxId: 29580 ],	SCOPe (2.08)
B	d2de5b1	All beta proteins	ISP domain	ISP domain	Ring hydroxylating alpha subunit ISP domain	Terminal oxygenase component of carbazole CarAa	(Janthinobacterium ) [TaxId: 29580 ],	SCOPe (2.08)
B	d2de5b2	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	Ring hydroxylating alpha subunit catalytic domain	Terminal oxygenase component of carbazole CarAa	(Janthinobacterium ) [TaxId: 29580 ],	SCOPe (2.08)
B	d2de5b3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Janthinobacterium ) [TaxId: 29580 ],	SCOPe (2.08)
C	d2de5c1	All beta proteins	ISP domain	ISP domain	Ring hydroxylating alpha subunit ISP domain	Terminal oxygenase component of carbazole CarAa	(Janthinobacterium ) [TaxId: 29580 ],	SCOPe (2.08)
C	d2de5c2	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	Ring hydroxylating alpha subunit catalytic domain	Terminal oxygenase component of carbazole CarAa	(Janthinobacterium ) [TaxId: 29580 ],	SCOPe (2.08)
C	d2de5c3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Janthinobacterium ) [TaxId: 29580 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	ISP domain	8080536	3000233	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ISP domain	8080536	3000233	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ISP domain	8080536	3000233	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bet v1-like	8039675	3000738	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ISP domain	8039674	3000233	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ISP domain	8039674	3000233	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bet v1-like	8039675	3000738	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bet v1-like	8039675	3000738	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ISP domain	8039674	3000233	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	MarR	e2de5D2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MarR	ECOD (v294.1)
E	MarR	e2de5E2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MarR	ECOD (v294.1)
F	MarR	e2de5F2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MarR	ECOD (v294.1)
A	Rieske	e2de5A1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Rieske	ECOD (v294.1)
A	Polyketide_cyc2	e2de5A2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Polyketide_cyc2	ECOD (v294.1)
A	C1_1	e2de5A3	A: a/b three-layered sandwiches	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: C1_1	ECOD (v294.1)
B	Rieske	e2de5B1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Rieske	ECOD (v294.1)
B	Polyketide_cyc2	e2de5B2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Polyketide_cyc2	ECOD (v294.1)
B	C1_1	e2de5B3	A: a/b three-layered sandwiches	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: C1_1	ECOD (v294.1)
C	Rieske	e2de5C1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Rieske	ECOD (v294.1)
C	Polyketide_cyc2	e2de5C2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Polyketide_cyc2	ECOD (v294.1)
C	C1_1	e2de5C3	A: a/b three-layered sandwiches	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: C1_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
E	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
F	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
A	3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
A	2.20.25.680	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
A	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
B	3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
B	2.20.25.680	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
B	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
C	3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
C	2.20.25.680	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
C	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, E, F	ferredoxin component of carbazole	oxidoreductase activity oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor oxidoreductase activity, acting on hydrogen as donor ferredoxin hydrogenase activity catalytic activity dioxygenase activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	cellular response to stimulus catabolic process response to stimulus cellular response to xenobiotic stimulus carbazole catabolic process xenobiotic catabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus response to chemical metabolic process cellular process	-
A, B, C	terminal oxygenase component of carbazole	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, E, F	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
D, E, F	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily
A, B, C	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
A, B, C	IPR050584	Cholesterol 7-desaturase	Family
A, B, C	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily
A, B, C	IPR021028	Homotrimeric ring hydroxylase, catalytic domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.