2D3O
Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth S] | d2d3os1 | All beta proteins | SH3-like barrel | Translation proteins SH3-like domain | Ribosomal proteins L24p and L21e | Ribosomal proteins L24 (L24p) | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
D [auth W] | d2d3ow1 | All alpha proteins | Long alpha-hairpin | Ribosomal protein L29 (L29p) | Ribosomal protein L29 (L29p) | Ribosomal protein L29 (L29p) | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
B [auth R] | d2d3or1 | Alpha and beta proteins (a+b) | Ribosomal proteins S24e, L23 and L15e | Ribosomal proteins S24e, L23 and L15e | L23p | Ribosomal protein L23 | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth S] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8038578 | 3000334 | SCOP2B (2022-06-29) |
D [auth W] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8038586 | 3000713 | SCOP2B (2022-06-29) |
E [auth 1] | SCOP2B Superfamily | Trigger factor ribosome-binding domain | 8075114 | 3001141 | SCOP2B (2022-06-29) |
B [auth R] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8038577 | 3000210 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth S] | ribosomal_L24_1 | e2d3oS2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
D [auth W] | Ribosomal_L29 | e2d3oW1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
E [auth 1] | Trigger_N | e2d3o13 | A: a+b two layers | X: Glucose permease domain IIB-like | H: Trigger factor ribosome-binding domain (From Topology) | T: Trigger factor ribosome-binding domain | F: Trigger_N | ECOD (1.6) |
B [auth R] | Ribosomal_L23_2 | e2d3oR1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth W] | 1.10.287.310 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) | |
E [auth 1] | 3.30.70.1050 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Trigger factor ribosome-binding domain | CATH (4.3.0) |
B [auth R] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth S] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
C [auth S] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
D [auth W] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
B [auth R] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |