2D0J | pdb_00002d0j

Crystal Structure of Human GlcAT-S Apo Form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2d0jd_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	1,3-glucuronyltransferase	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2d0jc_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	1,3-glucuronyltransferase	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2d0jb_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	1,3-glucuronyltransferase	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2d0ja_	Alpha and beta proteins (a/b)	Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	1,3-glucuronyltransferase	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8068194	3000077	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8068194	3000077	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleotide-diphospho-sugar transferases	8068194	3000077	SCOP2B (2022-06-29)
A	SCOP2 Family	1, 3-glucuronyltransferase	8068193	4000696	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleotide-diphospho-sugar transferases	8068194	3000077	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e2d0jD1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)
C		e2d0jC1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)
B		e2d0jB1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)
A		e2d0jA1	A: Globin-like	X: Globin-like	H: Globin-like	T: Ldh_1_N	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
C	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
B	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)
A	3.90.550.10	Alpha Beta	Alpha-Beta Complex	Spore Coat Polysaccharide Biosynthesis Protein SpsA	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03360	Glycosyltransferase family 43 (Glyco_transf_43)	Glycosyltransferase family 43	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2	UDP-glycosyltransferase activity glycosyltransferase activity glucuronosyltransferase activity transferase activity galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity hexosyltransferase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	carbohydrate derivative biosynthetic process proteoglycan biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process chondroitin sulfate proteoglycan metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process protein O-linked glycosylation via xylose protein O-linked glycosylation metabolic process cellular process protein metabolic process carbohydrate derivative biosynthetic process proteoglycan biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process chondroitin sulfate proteoglycan metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process protein O-linked glycosylation via xylose protein O-linked glycosylation metabolic process cellular process protein metabolic process macromolecule metabolic process chondroitin sulfate proteoglycan biosynthetic process proteoglycan metabolic process carbohydrate metabolic process carbohydrate biosynthetic process	membrane-bounded organelle Golgi membrane intracellular anatomical structure Golgi apparatus membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle bounding membrane of organelle cellular anatomical structure organelle cytoplasm organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR005027	Glycosyl transferase, family 43	Family
A, B, C, D	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q9NPZ5	atypical teratoid rhabdoid tumor malignant glioma schizophrenia gastric carcinoma medulloblastoma subependymal giant cell astrocytoma glioblastoma ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.