2D00 | pdb_00002d00

Subunit F of V-type ATPase/synthase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2d00f2	Alpha and beta proteins (a/b)	AtpF-like	AtpF-like	AtpF-like	automated matches	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
F	d2d00f3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
E	d2d00e2	Alpha and beta proteins (a/b)	AtpF-like	AtpF-like	AtpF-like	automated matches	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
E	d2d00e3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
D	d2d00d2	Alpha and beta proteins (a/b)	AtpF-like	AtpF-like	AtpF-like	automated matches	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
D	d2d00d3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
C	d2d00c2	Alpha and beta proteins (a/b)	AtpF-like	AtpF-like	AtpF-like	automated matches	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
C	d2d00c3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
B	d2d00b2	Alpha and beta proteins (a/b)	AtpF-like	AtpF-like	AtpF-like	automated matches	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
B	d2d00b3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
A	d2d00a1	Alpha and beta proteins (a/b)	AtpF-like	AtpF-like	AtpF-like	V-type ATP synthase subunit F, AtpF	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
A	d2d00a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	AtpF-like	8033711	3000828	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	AtpF-like	8033711	3000828	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	AtpF-like	8033711	3000828	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	AtpF-like	8033711	3000828	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	AtpF-like	8033711	3000828	SCOP2B (2022-06-29)
A	SCOP2 Family	AtpF-like	8021331	4002107	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	AtpF-like	8033711	3000828	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	RecU	e2d00F1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (develop294)
E	RecU	e2d00E1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (develop294)
D	RecU	e2d00D1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (develop294)
C	RecU	e2d00C1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (develop294)
B	RecU	e2d00B1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (develop294)
A	ATP-synt_F	e2d00A1	A: alpha bundles	X: Flavodoxin-like	H: AtpF-like	T: AtpF-like	F: ATP-synt_F	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.10580	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ATPase, V1 complex, subunit F	CATH (4.3.0)
F	6.10.140.810	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
E	3.40.50.10580	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ATPase, V1 complex, subunit F	CATH (4.3.0)
E	6.10.140.810	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
D	3.40.50.10580	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ATPase, V1 complex, subunit F	CATH (4.3.0)
D	6.10.140.810	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
C	3.40.50.10580	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ATPase, V1 complex, subunit F	CATH (4.3.0)
C	6.10.140.810	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
B	3.40.50.10580	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ATPase, V1 complex, subunit F	CATH (4.3.0)
B	6.10.140.810	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
A	3.40.50.10580	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	ATPase, V1 complex, subunit F	CATH (4.3.0)
A	6.10.140.810	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01990	ATP synthase (F/14-kDa) subunit (ATP-synt_F)	ATP synthase (F/14-kDa) subunit	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	V-type ATP synthase subunit F	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity proton-transporting ATPase activity, rotational mechanism ATPase-coupled monoatomic cation transmembrane transporter activity ATP-dependent activity active monoatomic ion transmembrane transporter activity ATPase-coupled ion transmembrane transporter activity active transmembrane transporter activity ATPase activity, coupled to transmembrane movement of ions, rotational mechanism monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity catalytic activity ligase activity	ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process phosphate-containing compound metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process proton motive force-driven plasma membrane ATP synthesis primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR022944	ATPase, V1 complex, subunit F, bacterial/archaeal	Family
A, B, C, D, E A, B, C, D, E, F	IPR036906	ATPase, V1 complex, subunit F superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR008218	ATPase, V1 complex, subunit F	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.