2CT2 | pdb_00002ct2

Solution Structure of the RING domain of the Tripartite motif protein 32

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	RING finger domain, C3HC4	8068305	4000374	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RING/U-box like	8068306	3000160	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	zf-C3HC4_4	e2ct2A1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: zf-C3HC4_4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13445	RING-type zinc-finger (zf-RING_UBOX)	RING-type zinc-finger	This zinc-finger is a typical RING-type of plant ubiquitin ligases [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tripartite motif protein 32	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding translation initiation factor binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding translation initiation factor binding identical protein binding transcription coactivator activity transcription regulator activity transcription coregulator activity transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding Tat protein binding ubiquitin binding ubiquitin-like protein binding RNA binding nucleic acid binding cytoskeletal protein binding myosin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus pattern recognition receptor signaling pathway negative regulation of biological process regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction cellular response to stimulus positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus pattern recognition receptor signaling pathway negative regulation of biological process regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway regulation of biological process immune response response to other organism immune response-activating cell surface receptor signaling pathway regulation of innate immune response response to external stimulus regulation of toll-like receptor 4 signaling pathway regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus negative regulation of signaling signaling positive regulation of biological process innate immune response activating cell surface receptor signaling pathway negative regulation of cell communication positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress negative regulation of cellular process innate immune response response to external biotic stimulus negative regulation of toll-like receptor 4 signaling pathway cell surface pattern recognition receptor signaling pathway regulation of signaling positive regulation of innate immune response cell surface receptor signaling pathway negative regulation of response to stimulus defense response biological regulation defense response to symbiont negative regulation of signal transduction negative regulation of immune system process immune system process toll-like receptor 4 signaling pathway regulation of cell communication cellular process positive regulation of cell communication positive regulation of signal transduction response to cytokine positive regulation of response to cytokine stimulus cytokine-mediated signaling pathway positive regulation of tumor necrosis factor-mediated signaling pathway cellular response to tumor necrosis factor tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus positive regulation of cellular process regulation of tumor necrosis factor-mediated signaling pathway regulation of cytokine-mediated signaling pathway response to peptide regulation of response to cytokine stimulus response to chemical response to tumor necrosis factor positive regulation of cytokine-mediated signaling pathway positive regulation of signaling developmental process cellular developmental process regulation of developmental process regulation of cell differentiation regulation of striated muscle cell differentiation muscle cell differentiation positive regulation of muscle cell differentiation muscle structure development positive regulation of developmental process regulation of muscle cell differentiation positive regulation of cell differentiation cell differentiation positive regulation of striated muscle cell differentiation anatomical structure development striated muscle cell differentiation positive regulation of DNA-binding transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal protein polymerization protein-containing complex organization homeostatic process free ubiquitin chain polymerization cellular component organization cellular component biogenesis cellular component assembly cellular homeostasis protein-containing complex assembly cellular component organization or biogenesis ubiquitin recycling multicellular organismal process plasma membrane bounded cell projection organization cell projection organization cell development neuron projection development nervous system development axon development generation of neurons neurogenesis multicellular organism development neuron differentiation neuron development system development positive regulation of protein metabolic process regulation of protein metabolic process positive regulation of metabolic process regulation of proteolysis proteolysis positive regulation of proteolysis positive regulation of macromolecule metabolic process catabolic process proteolysis involved in protein catabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process protein polyubiquitination positive regulation of NF-kappaB transcription factor activity response to light stimulus response to radiation response to abiotic stimulus response to UV fat cell differentiation negative regulation of cell population proliferation fibroblast proliferation cell population proliferation regulation of fibroblast proliferation regulation of cell population proliferation negative regulation of fibroblast proliferation positive regulation of nervous system development regulation of neurogenesis regulation of cell development regulation of nervous system development positive regulation of neurogenesis regulation of multicellular organismal process regulation of multicellular organismal development positive regulation of cell development positive regulation of multicellular organismal process positive regulation of locomotion regulation of cell motility regulation of locomotion positive regulation of cell motility cell motility locomotion positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization macroautophagy positive regulation of vacuole organization autophagy autophagosome organization regulation of autophagy positive regulation of autophagosome assembly positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of autophagy autophagosome assembly organelle assembly vacuole organization positive regulation of cellular component biogenesis regulation of autophagosome assembly regulation of catabolic process regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization positive regulation of catabolic process organelle organization regulation of macroautophagy regulation of organelle assembly positive regulation of organelle assembly response to nutrient levels cellular response to amino acid starvation cellular response to starvation cellular response to nutrient levels cellular response to stress response to amino acid starvation response to starvation negative regulation of intracellular signal transduction regulation of cellular response to stress regulation of intrinsic apoptotic signaling pathway in response to DNA damage regulation of programmed cell death regulation of intrinsic apoptotic signaling pathway intracellular signal transduction regulation of intracellular signal transduction negative regulation of apoptotic signaling pathway intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway negative regulation of apoptotic process DNA damage response apoptotic process programmed cell death regulation of apoptotic signaling pathway muscle cell cellular homeostasis cell cycle regulation of cell cycle positive regulation of cell cycle regulation of growth growth positive regulation of cell growth regulation of cell growth cell growth positive regulation of growth positive regulation of canonical NF-kappaB signal transduction intracellular signaling cassette positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction positive regulation of chemokine (C-C motif) ligand 20 production regulation of chemokine (C-C motif) ligand 20 production positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process chemokine (C-C motif) ligand 20 production regulation of cytokine production cytokine production regulation of chemokine production positive regulation of gene expression chemokine production positive regulation of chemokine production positive regulation of cytokine production actin ubiquitination actin cytoskeleton organization actin modification actin filament-based process cytoskeleton organization defense response to virus suppression of viral release by host response to virus negative regulation of organelle assembly plasma membrane bounded cell projection assembly negative regulation of plasma membrane bounded cell projection assembly cilium assembly negative regulation of cell projection organization cilium organization negative regulation of cellular component organization regulation of cell projection organization regulation of cell projection assembly regulation of plasma membrane bounded cell projection assembly regulation of cilium assembly negative regulation of organelle organization negative regulation of cilium assembly cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of protein catabolic process regulation of protein catabolic process positive regulation of neuron differentiation regulation of neuron differentiation protein K63-linked ubiquitination positive regulation of cell migration regulation of cell migration cell migration viral gene expression regulation of viral process negative regulation of viral process regulation of viral transcription negative regulation of viral transcription viral process viral transcription multicellular organismal-level homeostasis anatomical structure homeostasis tissue homeostasis response to oxidative stress response to interleukin-17 regulation of interleukin-17-mediated signaling pathway interleukin-17-mediated signaling pathway positive regulation of interleukin-17-mediated signaling pathway cellular response to interleukin-17	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle vacuole autophagosome intracellular membrane-bounded organelle mitochondrion myofilament myosin filament intracellular membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle vacuole autophagosome intracellular membrane-bounded organelle mitochondrion myofilament myosin filament intracellular membraneless organelle sarcomere striated muscle myosin thick filament membraneless organelle contractile muscle fiber supramolecular fiber supramolecular polymer supramolecular complex myofibril centrosome microtubule organizing center cytoskeleton microtubule cytoskeleton nucleus endoplasmic reticulum endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001258	NHL repeat	Repeat
A	IPR027370	Zinc finger, RING-type, eukaryotic	Domain
A	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A	IPR001841	Zinc finger, RING-type	Domain
A	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
A	IPR047051	TRIM32, B-box type 1 zinc finger	Domain
A	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A	IPR000315	B-box-type zinc finger	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q13049	Bardet-Biedl syndrome limb-girdle muscular dystrophy autosomal recessive limb-girdle muscular dystrophy type 2H Bardet-Biedl syndrome 11 intellectual disability myopathy polydactyly acquired metabolic disease chronic obstructive pulmonary disease medulloblastoma muscular dystrophy osteoarthritis subependymal giant cell astrocytoma arthrogryposis Bardet-Biedl syndrome 1 Bardet-Biedl syndrome limb-girdle muscular dystrophy autosomal recessive limb-girdle muscular dystrophy type 2H Bardet-Biedl syndrome 11 intellectual disability myopathy polydactyly acquired metabolic disease chronic obstructive pulmonary disease medulloblastoma muscular dystrophy osteoarthritis subependymal giant cell astrocytoma arthrogryposis Bardet-Biedl syndrome 1 Ciliopathies muscle tissue disease ovarian cancer lung cancer muscular disease obesity disorder

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.