2CSV | pdb_00002csv

Solution structure of the zf-B_box type2 domain of human tripartite motif protein TRIM29 isoform alpha

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2csva1	Small proteins	B-box zinc-binding domain	B-box zinc-binding domain	B-box zinc-binding domain	Tripartite motif-containing protein 29	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2csva3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2csva2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Type 2 B-box zinc-binding domain	8021310	4003723	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	B-box zinc-binding domain	8033690	3001359	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	zf-B_box	e2csvA1	A: few secondary structure elements	X: B-box zinc-binding domain-like	H: B-box zinc-binding domain (From Topology)	T: B-box zinc-binding domain	F: zf-B_box	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.160.60	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	Classic Zinc Finger	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00643	B-box zinc finger (zf-B_box)	B-box zinc finger		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tripartite motif protein 29	p53 binding protein binding binding cell adhesion molecule binding cadherin binding involved in cell-cell adhesion cadherin binding cell adhesion mediator activity cell-cell adhesion mediator activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding p53 binding protein binding binding cell adhesion molecule binding cadherin binding involved in cell-cell adhesion cadherin binding cell adhesion mediator activity cell-cell adhesion mediator activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding	biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus regulation of localization biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus regulation of localization regulation of biological process regulation of protein localization biological regulation negative regulation of biological process regulation of protein localization to nucleus protein localization to nucleus negative regulation of protein localization to nucleus localization macromolecule localization protein localization to organelle intracellular protein localization negative regulation of protein localization regulation of cellular process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process	cell-cell junction adherens junction cellular anatomical structure anchoring junction cell junction membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle lytic vacuole vacuole cytoplasm intracellular membrane-bounded organelle lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR051051	E3 ubiquitin-protein ligase TRIM/RNF	Family
A	IPR000315	B-box-type zinc finger	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q14134	breast cancer esophageal adenocarcinoma malignant colon neoplasm Malignant neoplasm of breast osteosarcoma pancreatic intraductal papillary-mucinous neoplasm ulcerative colitis breast carcinoma interstitial cystitis malignant ependymoma malignant pancreatic neoplasm ovarian cancer pituitary cancer Crohn disease large cell medulloblastoma breast cancer esophageal adenocarcinoma malignant colon neoplasm Malignant neoplasm of breast osteosarcoma pancreatic intraductal papillary-mucinous neoplasm ulcerative colitis breast carcinoma interstitial cystitis malignant ependymoma malignant pancreatic neoplasm ovarian cancer pituitary cancer Crohn disease large cell medulloblastoma malignant mesothelioma non-small cell lung carcinoma pancreatic ductal adenocarcinoma spina bifida

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.