2COO | pdb_00002coo

Solution structure of the e3_binding domain of dihydrolipoamide branched chaintransacylase

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	8076207	3001183	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HMG_box_2	e2cooA1	A: a/b three-layered sandwiches	X: Globin-like	H: Globin-like	T: Globin-like	F: HMG_box_2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02817	e3 binding domain (E3_binding)	e3 binding domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity dihydrolipoamide branched chain acyltransferase activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding	catabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process branched-chain amino acid catabolic process carboxylic acid catabolic process metabolic process cellular process small molecule metabolic process branched-chain amino acid metabolic process small molecule catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process branched-chain amino acid catabolic process carboxylic acid catabolic process metabolic process cellular process small molecule metabolic process branched-chain amino acid metabolic process small molecule catabolic process amino acid catabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process fatty-acyl-CoA metabolic process phosphorus metabolic process branched-chain alpha-keto acid decarboxylation to branched-chain acyl-CoA nucleoside phosphate metabolic process purine-containing compound metabolic process fatty acid derivative metabolic process organophosphate metabolic process lipid metabolic process	protein-containing complex catalytic complex branched-chain alpha-ketoacid dehydrogenase complex oxidoreductase complex transferase complex alpha-ketoacid dehydrogenase complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex catalytic complex branched-chain alpha-ketoacid dehydrogenase complex oxidoreductase complex transferase complex alpha-ketoacid dehydrogenase complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol membrane-enclosed lumen intracellular membraneless organelle nucleoid mitochondrial matrix intracellular organelle lumen organelle lumen membraneless organelle mitochondrial nucleoid cytoskeleton microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001078	2-oxoacid dehydrogenase acyltransferase, catalytic domain	Domain
A	IPR023213	Chloramphenicol acetyltransferase-like domain superfamily	Homologous Superfamily
A	IPR036625	E3-binding domain superfamily	Homologous Superfamily
A	IPR050743	2-oxoacid dehydrogenase family, E2 component	Family
A	IPR004167	Peripheral subunit-binding domain	Domain
A	IPR011053	Single hybrid motif	Homologous Superfamily
A	IPR003016	2-oxo acid dehydrogenase, lipoyl-binding site	Binding Site
A	IPR000089	Biotin/lipoyl attachment	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P11182	maple syrup urine disease malignant ependymoma Maple Syrup Urine Disease, Thiamine Responsive osteosarcoma Pick disease adenoma psoriasis classic maple syrup urine disease esophageal adenocarcinoma glioblastoma inborn errors of metabolism intermediate maple syrup urine disease large cell medulloblastoma malignant glioma medulloblastoma maple syrup urine disease malignant ependymoma Maple Syrup Urine Disease, Thiamine Responsive osteosarcoma Pick disease adenoma psoriasis classic maple syrup urine disease esophageal adenocarcinoma glioblastoma inborn errors of metabolism intermediate maple syrup urine disease large cell medulloblastoma malignant glioma medulloblastoma ovarian cancer plasma cell myeloma astrocytic tumor drug-induced liver injury gastric cancer hepatocellular carcinoma inherited organic acidemia intermittent maple syrup urine disease lung cancer oligodendroglioma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor gastric carcinoma intellectual disability interstitial cystitis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.