2CLB | pdb_00002clb

The structure of the DPS-like protein from Sulfolobus solfataricus reveals a bacterioferritin-like di-metal binding site within a Dps- like dodecameric assembly

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2clbA1	A: Globin-like	X: Globin-like	H: Globin-like	T: Ldh_1_N	F:	ECOD (20:10:01)
B		e2clbB1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)
C		e2clbC1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)
D		e2clbD1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)
F [auth N]		e2clbN1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)
G [auth O]		e2clbO1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)
H [auth P]		e2clbP1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)
E [auth M]		e2clbM1	A: HTH	X: HTH	H: winged helix domain	T: HMG_CoA_synt_N	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F [auth N]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G [auth O]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H [auth P]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E [auth M]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E [auth M], A, B, C, D, E [auth M], F [auth N], G [auth O], H [auth P]	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E [auth M], A, B, C, D, E [auth M], F [auth N], G [auth O], H [auth P]	DPS-LIKE PROTEIN	cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding tetrapyrrole binding heme binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding tetrapyrrole binding heme binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol nucleoid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E [auth M], A, B, C, D, E [auth M], F [auth N], G [auth O], H [auth P]	IPR014490	DNA-binding protein from starved cells-like	Family
A, B, C, D, E [auth M], A, B, C, D, E [auth M], F [auth N], G [auth O], H [auth P]	IPR033921	DPS-like protein, ferritin-like diiron-binding domain	Domain
A, B, C, D, E [auth M], A, B, C, D, E [auth M], F [auth N], G [auth O], H [auth P]	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E [auth M], A, B, C, D, E [auth M], F [auth N], G [auth O], H [auth P]	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E [auth M], A, B, C, D, E [auth M], F [auth N], G [auth O], H [auth P]	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E [auth M], A, B, C, D, E [auth M], F [auth N], G [auth O], H [auth P]	IPR053475	DNA Protection During Starvation	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.