2CH5 | pdb_00002ch5

Crystal structure of human N-acetylglucosamine kinase in complex with N-acetylglucosamine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2ch5a1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	BadF/BadG/BcrA/BcrD-like	N-acetylglucosamine kinase, NAGK, C-terminal domain	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2ch5a2	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	BadF/BadG/BcrA/BcrD-like	N-acetylglucosamine kinase, NAGK, N-terminal domain	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2ch5a3	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2ch5b1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	BadF/BadG/BcrA/BcrD-like	N-acetylglucosamine kinase, NAGK, C-terminal domain	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2ch5b2	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	BadF/BadG/BcrA/BcrD-like	N-acetylglucosamine kinase, NAGK, N-terminal domain	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2ch5b3	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2ch5c1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	BadF/BadG/BcrA/BcrD-like	N-acetylglucosamine kinase, NAGK, C-terminal domain	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2ch5c2	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	BadF/BadG/BcrA/BcrD-like	N-acetylglucosamine kinase, NAGK, N-terminal domain	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2ch5c3	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d2ch5d1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	BadF/BadG/BcrA/BcrD-like	N-acetylglucosamine kinase, NAGK, C-terminal domain	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d2ch5d2	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	BadF/BadG/BcrA/BcrD-like	N-acetylglucosamine kinase, NAGK, N-terminal domain	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d2ch5d3	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	BadF/BadG/BcrA/BcrD-like	8026486	4003392	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Actin-like ATPases	8038864	3000092	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Actin-like ATPases	8038865	3000092	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8038865	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8038864	3000092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8038865	3000092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8038864	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8038865	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8038864	3000092	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BcrAD_BadFG	e2ch5A1	A: a/b three-layered sandwiches	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: BcrAD_BadFG	ECOD (v294.1)
B	Hexokinase_2	e2ch5B1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Hexokinase_2	ECOD (v294.1)
C	Hexokinase_2	e2ch5C1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Hexokinase_2	ECOD (v294.1)
D	Hexokinase_2	e2ch5D1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: Hexokinase_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
C	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
D	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01869	BadF/BadG/BcrA/BcrD ATPase family (BcrAD_BadFG)	BadF/BadG/BcrA/BcrD ATPase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	NAGK PROTEIN	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase activity transferase activity catalytic activity muramyl dipeptide kinase activity transferase activity, transferring phosphorus-containing groups N-acylmannosamine kinase activity carbohydrate kinase activity phosphotransferase activity, alcohol group as acceptor N-acetylglucosamine kinase activity	N-acetylneuraminate catabolic process carbohydrate derivative catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid catabolic process organic acid metabolic process amino sugar catabolic process carboxylic acid catabolic process amino sugar metabolic process small molecule metabolic process metabolic process cellular process N-acetylneuraminate catabolic process carbohydrate derivative catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid catabolic process organic acid metabolic process amino sugar catabolic process carboxylic acid catabolic process amino sugar metabolic process small molecule metabolic process metabolic process cellular process small molecule catabolic process N-acetylneuraminate metabolic process response to stimulus response to chemical response to oxygen-containing compound response to muramyl dipeptide response to nitrogen compound nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process amino sugar biosynthetic process nucleotide-sugar metabolic process primary metabolic process nucleobase-containing compound biosynthetic process UDP-N-acetylglucosamine biosynthetic process nucleobase-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process nucleotide-sugar biosynthetic process phosphorus metabolic process UDP-N-acetylglucosamine metabolic process biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus N-acetylmannosamine metabolic process defense response to bacterium response to bacterium N-acetylglucosamine catabolic process N-acetylglucosamine metabolic process glucosamine-containing compound catabolic process cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus regulation of cellular process positive regulation of signal transduction pattern recognition receptor signaling pathway regulation of signal transduction intracellular signal transduction cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process positive regulation of pattern recognition receptor signaling pathway regulation of innate immune response positive regulation of intracellular signal transduction positive regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway regulation of response to stimulus regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process regulation of cytoplasmic pattern recognition receptor signaling pathway positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of intracellular signal transduction regulation of response to stress nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway nucleotide-binding oligomerization domain containing 2 signaling pathway positive regulation of cellular process regulation of signaling positive regulation of innate immune response biological regulation regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway regulation of cell communication positive regulation of signaling	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR002731	ATPase, BadF/BadG/BcrA/BcrD type	Domain
A, B, C, D	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B, C, D	IPR039758	N-acetyl-D-glucosamine kinase NAGK-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q9UJ70	Neoplasm Metastasis prostate cancer astrocytic tumor juvenile dermatomyositis esophageal adenocarcinoma ovarian cancer psoriasis glioblastoma malignant mesothelioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.