2CDO | pdb_00002cdo

structure of agarase carbohydrate binding module in complex with neoagarohexaose

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2cdod_	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	automated matches	automated matches	(Saccharophagus degradans ) [TaxId: 86304 ],	SCOPe (2.08)
C	d2cdoc_	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	automated matches	automated matches	(Saccharophagus degradans ) [TaxId: 86304 ],	SCOPe (2.08)
B	d2cdob_	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	automated matches	automated matches	(Saccharophagus degradans ) [TaxId: 86304 ],	SCOPe (2.08)
A	d2cdoa_	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	automated matches	automated matches	(Saccharophagus degradans ) [TaxId: 86304 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Hepar_II_III	e2cdoD1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (develop294)
C	Hepar_II_III	e2cdoC1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (develop294)
B	Hepar_II_III	e2cdoB1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (develop294)
A	C1-set	e2cdoA1	A: alpha bundles	X: Globin-like	H: Globin-like	T: Globin-like	F: C1-set	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
C	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
B	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
A	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	BETA-AGARASE 1	hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity beta-agarase activity catalytic activity binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B, C, D	IPR000757	Beta-glucanase-like, N-terminal domain	Domain
A, B, C, D	IPR005084	Carbohydrate binding module family 6	Domain
A, B, C, D	IPR006584	Cellulose binding, type IV	Domain
A, B, C, D	IPR016287	Beta-agarase	Family
A, B, C, D	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.