2C4U | pdb_00002c4u

Crystal structure of the apo form of the 5'-Fluoro-5'-deoxyadenosine synthase enzyme from Streptomyces cattleya

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2c4ua1	All beta proteins	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
A	d2c4ua2	Alpha and beta proteins (a/b)	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
F	d2c4uf1	All beta proteins	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
F	d2c4uf2	Alpha and beta proteins (a/b)	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
E	d2c4ue1	All beta proteins	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
E	d2c4ue2	Alpha and beta proteins (a/b)	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
D	d2c4ud1	All beta proteins	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
D	d2c4ud2	Alpha and beta proteins (a/b)	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
C	d2c4uc1	All beta proteins	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
C	d2c4uc2	Alpha and beta proteins (a/b)	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
B	d2c4ub1	All beta proteins	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	Bacterial fluorinating enzyme, C-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)
B	d2c4ub2	Alpha and beta proteins (a/b)	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	Bacterial fluorinating enzyme, N-terminal domain	5'-fluoro-5'-deoxyadenosine synthase	(Streptantibioticus cattleyicolor ) [TaxId: 29303 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Bacterial fluorinating enzyme, C-terminal domain	8040851	3001954	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bacterial fluorinating enzyme, N-terminal domain	8040852	3000872	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Bacterial fluorinating enzyme, N-terminal domain	8040852	3000872	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Bacterial fluorinating enzyme, C-terminal domain	8040851	3001954	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Bacterial fluorinating enzyme, N-terminal domain	8040852	3000872	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Bacterial fluorinating enzyme, C-terminal domain	8040851	3001954	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Bacterial fluorinating enzyme, C-terminal domain	8040851	3001954	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Bacterial fluorinating enzyme, N-terminal domain	8040852	3000872	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bacterial fluorinating enzyme, N-terminal domain	8040852	3000872	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bacterial fluorinating enzyme, C-terminal domain	8040851	3001954	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bacterial fluorinating enzyme, C-terminal domain	8040851	3001954	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bacterial fluorinating enzyme, N-terminal domain	8040852	3000872	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SAM_adeno_trans_C	e2c4uA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Bacterial fluorinating enzyme-C	F: SAM_adeno_trans_C	ECOD (1.6)
A	SAM_adeno_trans_N	e2c4uA2	A: a/b three-layered sandwiches	X: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	H: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	T: Bacterial fluorinating enzyme, N-terminal domain	F: SAM_adeno_trans_N	ECOD (1.6)
F	SAM_adeno_trans_C	e2c4uF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Bacterial fluorinating enzyme-C	F: SAM_adeno_trans_C	ECOD (1.6)
F	SAM_adeno_trans_N	e2c4uF2	A: a/b three-layered sandwiches	X: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	H: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	T: Bacterial fluorinating enzyme, N-terminal domain	F: SAM_adeno_trans_N	ECOD (1.6)
E	SAM_adeno_trans_C	e2c4uE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Bacterial fluorinating enzyme-C	F: SAM_adeno_trans_C	ECOD (1.6)
E	SAM_adeno_trans_N	e2c4uE2	A: a/b three-layered sandwiches	X: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	H: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	T: Bacterial fluorinating enzyme, N-terminal domain	F: SAM_adeno_trans_N	ECOD (1.6)
D	SAM_adeno_trans_C	e2c4uD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Bacterial fluorinating enzyme-C	F: SAM_adeno_trans_C	ECOD (1.6)
D	SAM_adeno_trans_N	e2c4uD2	A: a/b three-layered sandwiches	X: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	H: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	T: Bacterial fluorinating enzyme, N-terminal domain	F: SAM_adeno_trans_N	ECOD (1.6)
C	SAM_adeno_trans_C	e2c4uC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Bacterial fluorinating enzyme-C	F: SAM_adeno_trans_C	ECOD (1.6)
C	SAM_adeno_trans_N	e2c4uC2	A: a/b three-layered sandwiches	X: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	H: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	T: Bacterial fluorinating enzyme, N-terminal domain	F: SAM_adeno_trans_N	ECOD (1.6)
B	SAM_adeno_trans_C	e2c4uB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Bacterial fluorinating enzyme-C	F: SAM_adeno_trans_C	ECOD (1.6)
B	SAM_adeno_trans_N	e2c4uB2	A: a/b three-layered sandwiches	X: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	H: Bacterial fluorinating enzyme, N-terminal domain (From Topology)	T: Bacterial fluorinating enzyme, N-terminal domain	F: SAM_adeno_trans_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal	CATH (4.3.0)
A	2.40.30.90	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
F	3.40.50.10790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal	CATH (4.3.0)
F	2.40.30.90	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
E	3.40.50.10790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal	CATH (4.3.0)
E	2.40.30.90	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
D	3.40.50.10790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal	CATH (4.3.0)
D	2.40.30.90	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
C	3.40.50.10790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal	CATH (4.3.0)
C	2.40.30.90	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
B	3.40.50.10790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal	CATH (4.3.0)
B	2.40.30.90	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE	adenosyl-fluoride synthase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR023227	S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR023228	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR046469	S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR002747	S-adenosyl-l-methionine hydroxide adenosyltransferase	Family
A, B, C, D, E A, B, C, D, E, F	IPR046470	S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR030978	Fluorinase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.