2BYT | pdb_00002byt

Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth D]	SCOP2B Superfamily	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	8042404	3001786	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	ValRS/IleRS/LeuRS editing domain	8042405	3001115	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Nucleotidylyl transferase	8042406	3001541	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Nucleotidylyl transferase	8042406	3001541	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	8042404	3001786	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nucleotidylyl transferase	8042406	3001541	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ValRS/IleRS/LeuRS editing domain	8042405	3001115	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nucleotidylyl transferase	8042406	3001541	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth D]	tRNA-synt_1	e2bytD1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: tRNA-synt_1	ECOD (develop294)
C [auth D]	tRNA-synt_1e	e2bytD8	A: alpha bundles	X: P-loop domains-like	H: beta-helix of amnionless (AMN) extracellular domain	T: beta-helix of amnionless (AMN) extracellular domain	F: tRNA-synt_1e	ECOD (develop294)
A	tRNA-synt_1	e2bytA1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: tRNA-synt_1	ECOD (develop294)
A	tRNA-synt_1e	e2bytA6	A: alpha bundles	X: P-loop domains-like	H: beta-helix of amnionless (AMN) extracellular domain	T: beta-helix of amnionless (AMN) extracellular domain	F: tRNA-synt_1e	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth D]	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
C [auth D]	3.90.740.10	Alpha Beta	Alpha-Beta Complex	Isoleucyl-tRNA Synthetase	domain 2	CATH (4.3.0)
C [auth D]	2.30.210.10	Mainly Beta	Roll	Leucyl-tRNA synthetase, domain 3	Leucyl-tRNA synthetase, domain 3	CATH (4.3.0)
C [auth D]	1.10.730.10	Mainly Alpha	Orthogonal Bundle	Isoleucyl-tRNA Synthetase	Domain 1	CATH (4.3.0)
C [auth D]	3.10.20.590	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (4.3.0)
A	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
A	3.90.740.10	Alpha Beta	Alpha-Beta Complex	Isoleucyl-tRNA Synthetase	domain 2	CATH (4.3.0)
A	2.30.210.10	Mainly Beta	Roll	Leucyl-tRNA synthetase, domain 3	Leucyl-tRNA synthetase, domain 3	CATH (4.3.0)
A	1.10.730.10	Mainly Alpha	Orthogonal Bundle	Isoleucyl-tRNA Synthetase	Domain 1	CATH (4.3.0)
A	3.10.20.590	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D [auth E]	TRNALEU TRANSCRIPT WITH ANTICODON CAG	-	-	-
A, C [auth D]	LEUCYL-TRNA SYNTHETASE	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ligase activity, forming carbon-oxygen bonds aminoacyl-tRNA ligase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid leucine-tRNA ligase activity catalytic activity, acting on a tRNA catalytic activity ligase activity aminoacyl-tRNA deacylase activity hydrolase activity, acting on ester bonds deacylase activity carboxylic ester hydrolase activity hydrolase activity cation binding metal ion binding	amino acid activation tRNA aminoacylation RNA metabolic process primary metabolic process amino acid metabolic process translation gene expression tRNA aminoacylation for protein translation protein biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process biosynthetic process amino acid activation tRNA aminoacylation RNA metabolic process primary metabolic process amino acid metabolic process translation gene expression tRNA aminoacylation for protein translation protein biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process nucleobase-containing compound metabolic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process leucyl-tRNA aminoacylation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth D]	IPR023356	Leucyl-tRNA synthetase, domain 3	Domain
A, C [auth D]	IPR025709	Leucyl-tRNA synthetase, editing domain	Domain
A, C [auth D]	IPR001412	Aminoacyl-tRNA synthetase, class I, conserved site	Conserved Site
A, C [auth D]	IPR015413	Methionyl/Leucyl tRNA synthetase	Domain
A, C [auth D]	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	Homologous Superfamily
A, C [auth D]	IPR002300	Aminoacyl-tRNA synthetase, class Ia	Domain
A, C [auth D]	IPR009008	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Homologous Superfamily
A, C [auth D]	IPR009080	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Homologous Superfamily
A, C [auth D]	IPR013155	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Domain
A, C [auth D]	IPR002302	Leucine-tRNA ligase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.