2BKC | pdb_00002bkc

The X-ray structure of the H43G Listeria innocua Dps mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
X [auth Y]	d2bkcy_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
W [auth X]	d2bkcx_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
V	d2bkcv_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
U	d2bkcu_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
T	d2bkct_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
S	d2bkcs_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
R	d2bkcr_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
Q	d2bkcq_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
P	d2bkcp_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
O	d2bkco_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
N	d2bkcn_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
M	d2bkcm_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
L	d2bkcl_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
K	d2bkck_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
J	d2bkcj_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
I	d2bkci_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
H	d2bkch_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
G	d2bkcg_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
F	d2bkcf_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
E	d2bkce_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
D	d2bkcd_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
C	d2bkcc_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
B	d2bkcb_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)
A	d2bkca1	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Listeria innocua ) [TaxId: 1642 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X [auth Y]	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
W [auth X]	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8037003	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth Y]	Ferritin_1	e2bkcY1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
W [auth X]	Ferritin_1	e2bkcX1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
V	Ferritin_1	e2bkcV1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
U	Ferritin_1	e2bkcU1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
T	Ferritin_1	e2bkcT1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
S	Ferritin_1	e2bkcS1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
R	Ferritin_1	e2bkcR1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
Q	Ferritin_1	e2bkcQ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
P	Ferritin_1	e2bkcP1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
O	Ferritin_1	e2bkcO1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
N	Ferritin_1	e2bkcN1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
M	Ferritin_1	e2bkcM1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
L	Ferritin_1	e2bkcL1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
K	Ferritin_1	e2bkcK1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
J	Ferritin_1	e2bkcJ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
I	Ferritin_1	e2bkcI1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
H	Ferritin_1	e2bkcH1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
G	Ferritin_1	e2bkcG1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
F	Ferritin_1	e2bkcF1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
E	Ferritin_1	e2bkcE1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
D	Ferritin_1	e2bkcD1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
C	Ferritin_1	e2bkcC1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
B	Ferritin_1	e2bkcB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
A	Ferritin_1	e2bkcA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X [auth Y]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
W [auth X]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
V	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
U	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
T	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
S	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
R	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
Q	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
P	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
O	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
N	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
M	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	NON-HEME IRON-CONTAINING FERRITIN	oxidoreductase activity, acting on metal ions oxidoreductase activity catalytic activity cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR002177	DNA-binding protein Dps	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth Y]	IPR023188	DNA-binding protein Dps, conserved site	Conserved Site