2AWI | pdb_00002awi

Structure of PrgX Y153C mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2awia1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
A	d2awia2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
B	d2awib1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
B	d2awib2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
C	d2awic1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
C	d2awic2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
E	d2awie1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
E	d2awie2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
F	d2awif1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
F	d2awif2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
G	d2awig1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
G	d2awig2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
H	d2awih1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
H	d2awih2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
I	d2awii1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
I	d2awii2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
J	d2awij1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
J	d2awij2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
K	d2awik1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
K	d2awik2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
L	d2awil1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
L	d2awil2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
D	d2awid1	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	PrgX N-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)
D	d2awid2	All alpha proteins	alpha-alpha superhelix	TPR-like	PrgX C-terminal domain-like	PrgX	(Enterococcus faecalis ) [TaxId: 1351 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PrgX N-terminal domain-like	8025042	4001280	SCOP2 (2022-06-29)
A	SCOP2 Family	PrgX C-terminal domain-like	8025043	4001554	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TPR-like	8037422	3001345	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8037421	3000119	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TPR-like	8037422	3001345	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HTH_3	e2awiA1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
A	PrgX_C_TPR	e2awiA2	A: alpha bundles	X: Repetitive alpha hairpins	H: ARM repeat	T: ARM repeat	F: PrgX_C_TPR	ECOD (v294.1)
B	Topoisom_I,Topo_C_assoc	e2awiB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
B		e2awiB2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
C	Topoisom_I,Topo_C_assoc	e2awiC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
C		e2awiC2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
E	Topoisom_I,Topo_C_assoc	e2awiE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
E		e2awiE2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
F	Topoisom_I,Topo_C_assoc	e2awiF1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
F		e2awiF2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
G	Topoisom_I,Topo_C_assoc	e2awiG1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
G		e2awiG2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
H	Topoisom_I,Topo_C_assoc	e2awiH1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
H		e2awiH2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
I	Topoisom_I,Topo_C_assoc	e2awiI1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
I		e2awiI2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
J	Topoisom_I,Topo_C_assoc	e2awiJ1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
J		e2awiJ2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
K	Topoisom_I,Topo_C_assoc	e2awiK1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
K		e2awiK2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
L	Topoisom_I,Topo_C_assoc	e2awiL1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
L		e2awiL2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)
D	Topoisom_I,Topo_C_assoc	e2awiD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: YozE-like	T: Ribbon-helix-helix	F: Topoisom_I,Topo_C_assoc	ECOD (v294.1)
D		e2awiD2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
A	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
B	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
B	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
C	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
C	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
E	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
E	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
F	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
F	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
G	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
G	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
H	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
H	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
I	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
I	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
J	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
J	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
K	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
K	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
L	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
L	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
D	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
D	1.25.40.400	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PrgX	DNA binding binding nucleic acid binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process	protein-containing complex transcription regulator complex transcription repressor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001387	Cro/C1-type, helix-turn-helix domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR055234	Pheromone cCF10 receptor-like, TPR region	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	Homologous Superfamily