2AVW

Crystal structure of monoclinic form of streptococcus Mac-1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2avwa_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	IgG-specific endopeptidase IdeS (Sib38)	automated matches	(Streptococcus pyogenes MGAS5005 ) [TaxId: 293653 ],	SCOPe (2.08)
B	d2avwb_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	IgG-specific endopeptidase IdeS (Sib38)	automated matches	(Streptococcus pyogenes MGAS5005 ) [TaxId: 293653 ],	SCOPe (2.08)
C	d2avwc_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	IgG-specific endopeptidase IdeS (Sib38)	automated matches	(Streptococcus pyogenes MGAS5005 ) [TaxId: 293653 ],	SCOPe (2.08)
D	d2avwd_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	IgG-specific endopeptidase IdeS (Sib38)	automated matches	(Streptococcus pyogenes MGAS5005 ) [TaxId: 293653 ],	SCOPe (2.08)
E	d2avwe_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	IgG-specific endopeptidase IdeS (Sib38)	automated matches	(Streptococcus pyogenes MGAS5005 ) [TaxId: 293653 ],	SCOPe (2.08)
F	d2avwf_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	IgG-specific endopeptidase IdeS (Sib38)	automated matches	(Streptococcus pyogenes MGAS5005 ) [TaxId: 293653 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF09028	e2avwA1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF09028	ECOD (1.6)
B	PF09028	e2avwB1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF09028	ECOD (1.6)
C	PF09028	e2avwC1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF09028	ECOD (1.6)
D	PF09028	e2avwD1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF09028	ECOD (1.6)
E	PF09028	e2avwE1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF09028	ECOD (1.6)
F	PF09028	e2avwF1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: PF09028	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)
B	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)
C	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)
D	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)
E	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)
F	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF09028	Mac 1 (Mac-1)	Mac 1	The bacterial protein Mac 1 adopts an alpha/beta fold, with 14 beta strands and 9 alpha helices. The N-terminal domain is made up predominantly of alpha helices, whereas the C-terminal domain consists predominantly of beta sheets. Mac 1 blocks polymo ...	The bacterial protein Mac 1 adopts an alpha/beta fold, with 14 beta strands and 9 alpha helices. The N-terminal domain is made up predominantly of alpha helices, whereas the C-terminal domain consists predominantly of beta sheets. Mac 1 blocks polymorphonuclear opsonophagocytosis, inhibits the production of reactive oxygen species and contains IgG endopeptidase activity [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	IgG-degrading protease	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity identical protein binding protein binding binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR015117	Ig protease IdeS	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.